View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6682_2D_low_3 (Length: 988)
Name: NF6682_2D_low_3
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_3 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 889; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 889; E-Value: 0
Query Start/End: Original strand, 14 - 984
Target Start/End: Original strand, 2308658 - 2309625
Alignment:
| Q |
14 |
tttggtgttccgtatatatgcggcacgtttgtattatttatctttccgtttctatttgcgagtggtacaatttttgtacatctcgatgagaataaaattt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2308658 |
tttggtgttccgtatatatgcggcacgtttgtattatttatctttccgtttctatctgcgagtggtacaatttttgtacatctcgacgagaataaaattt |
2308757 |
T |
|
| Q |
114 |
tccgtttcnnnnnnnnnnnntcaaaagcgacaggaggacatctaactcacactaatcatatatatgaatactgactgccctatatcaacattatagatat |
213 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2308758 |
gccgttcaaaaaaaaaaaaatcaaaagcgacaggaagacatctaactcacactaatcatatatatgaatactgactgccctatatcaacattatagatat |
2308857 |
T |
|
| Q |
214 |
agagtataaacagcaagacctttccgagtattgtgtttcatggtggggagcactgatacgcgatgacttgaatacgagaggtggagaattgagtccgaga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2308858 |
agagtataaacagcaagacctttccgagtattgtgtttcatggtggggagcactgatacgcgatgacttgaatacgagaggtggagaattgagtccgaga |
2308957 |
T |
|
| Q |
314 |
aacccctgtgtcgcatgagaagccttgacaggctttatcggagatagagtgttgacaaatctcaaaaagggagattcctgaaagtaagaagacggcaaga |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2308958 |
aacccctgtgtcgcatgagaagccttgacaggctttatcggagatagagtgttgacaaatctcaaaaagggagattcctgaaagtaagaagacggcaaga |
2309057 |
T |
|
| Q |
414 |
tgtaaattttattccttattcatgatactagaaatgaaatgaaagaatccgaaaaaatactacacaagtcaacgtaaataacacactaatctcaagacat |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2309058 |
tgtaaattttattccttattcatgatactagaaatgaaatgaaagaatccgaaaaaatactacacaagtcaacgtaaataacacactaatctcaagacat |
2309157 |
T |
|
| Q |
514 |
ccctaaacaaaaaagacggttctagaaacacaatcaacacaggataccaataatcagttatcaatgtgtagaactacaatgcaaatgtacctaattgatg |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2309158 |
ccctaaacaaaaaagacggttctagaaacacaatcaacacaggataccaataatcagttatcaatgtgtagaactacaatgcaaatgtacctaat---tg |
2309254 |
T |
|
| Q |
614 |
ataagcatatattcattttaatgccaaaatgagacggtgtgggttaactaacatcagagagggtagaccaaaagcaatttcagtgagttttatctaatca |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2309255 |
ataagcatatattcattttaatgccaaaatgagacggtgtgggttaactaacatcagagagggtagaccaaaagcaatttcagtgaattttatctaatca |
2309354 |
T |
|
| Q |
714 |
aataaatataattccaaaaaactctcttgaaacaatcaattatcaaagtgcggcaccacaacgcacatgtgcgtaaatcctctaaagtccattaacacag |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2309355 |
aataaatataattccaaaaaactctcttgaaacaatcaattatcaaagtgcggcaccacaacgcacatgtgcgtaaatcctctaaagtccattaacacag |
2309454 |
T |
|
| Q |
814 |
cactgtcaaatagtggctatagtgtagcagaatctgaacaaacagctattgttccgagatatggtattcagtgtacaatgtgttgtcaaatagcggcgct |
913 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2309455 |
cactgtcaaatagtggctatagtgtagcagaatctgaacaaacagctattgttccgagatatggtattcagtgtacaatgtgttgtcaaatagcggtgct |
2309554 |
T |
|
| Q |
914 |
ttaacatagaatttgatcaaaatgttatttttcgcaatccacaatggacaacattgattaacagaatctga |
984 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2309555 |
ttaacatagaatttgatcaaaatgttatttttcgcaatccacaatggacaacattgattaacagaatctga |
2309625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 231 - 974
Target Start/End: Original strand, 2318015 - 2318751
Alignment:
| Q |
231 |
acctttccgagtattgtgtttcatggtggggagcactgatacgcgatgacttgaatacgagaggtggagaattgagtccgagaaacccctgtgtcgcatg |
330 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2318015 |
acctttccgagtattgtgtttcacggtggggagcactgatacgtggtgacttgaatacgaggggtggagaattgagtccgagaaacccatgtgtcgcatg |
2318114 |
T |
|
| Q |
331 |
agaagccttgacaggctttatcggagatagagtgttgacaaatctcaaaaagggagattcctgaaagtaagaagacggcaagatgtaaattttattcctt |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
2318115 |
agaagccttgacaggctttatcggagatagagtgttgacaaatctcaaaaagggagattcct-aaagtaagaagacgacaagatgtaaatttcattcctt |
2318213 |
T |
|
| Q |
431 |
attcatgatactagaaatgaaatgaaagaatccgaaaaaatactacacaagtcaacgtaaataacacactaatctcaagacatccctaaacaaaaaagac |
530 |
Q |
| |
|
||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2318214 |
attggtgatactagaaatgaaatgaaagaatctg-aaaaatactacacaagtcaaccaaaataacacactagtctcaagacatccctaaacaaaaaagat |
2318312 |
T |
|
| Q |
531 |
ggttctag-aaacacaatcaacacaggataccaataatcagttatcaatgtgtagaactacaatgcaaatgtacctaattgatgataagcatatattcat |
629 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| ||||||||||||||| ||| |||||||||||| |||||| ||||||||||||||| || |
|
|
| T |
2318313 |
ggttctagaaaacacaatcaacacaagataccaataattggttatcaatgtgtagcactgcaatgcaaatgtgcctaat---tgataagcatatatttat |
2318409 |
T |
|
| Q |
630 |
tttaatgccaaaatgagacggtgtgggttaactaacatcagagagggtagaccaaaagcaatttcagtgagttttatctaatcaaataaatataattcca |
729 |
Q |
| |
|
|| |||| |||||| ||| ||||| | ||| |||||| ||||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||| || |
|
|
| T |
2318410 |
ttaaatgtaaaaatgggacagtgtgagataattaacataagagagggtagaccaaaagcaatcgtagtgaattttatccaatcaaacaaatataatttca |
2318509 |
T |
|
| Q |
730 |
aaaaactctcttgaaacaatcaattatcaaagtgcggcaccacaacgcacatgtgcgtaaatcctctaaagtccattaacacagcactgtcaaatagtgg |
829 |
Q |
| |
|
|| || |||||| ||||||||||||||||||||| |||||| |||| | |||| |||||||||||||||||||||||||| | |||||| ||||||| |
|
|
| T |
2318510 |
aacaagtctcttacaacaatcaattatcaaagtgcaacaccac--cgcataagtgcataaatcctctaaagtccattaacacaacgctgtcacatagtgg |
2318607 |
T |
|
| Q |
830 |
ctatagtgtagcagaatctgaacaaacagctattgttccgagatatggtattcagtgtacaatgtgttgtcaaatagcggcgctttaac-atagaatttg |
928 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||| ||||| || ||||||||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
2318608 |
ctatagtgtagcagaatctgaacaaaccgctattgttctgagaaatggtgtt--ttgtacaatgcgttgtcaaatagcggcgctgtaacaatagaattca |
2318705 |
T |
|
| Q |
929 |
atcaaaatgttatttttcgcaatccacaatggacaacattgattaa |
974 |
Q |
| |
|
| ||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
2318706 |
aacaaaatgcgattttttgcaatccacaatggacaacattgattaa |
2318751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 2317283 - 2317380
Alignment:
| Q |
134 |
tcaaaagcgacaggaggacatctaactcacactaatcatatatatgaatactgactgccctatatcaacattatagatatagagtataaacagcaaga |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2317283 |
tcaaaagcgacaggaggacatctaactcacactaatcatatatattaatactgactgccctatatcaacattatagatatagagtataaacagcaaga |
2317380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 320 - 390
Target Start/End: Original strand, 144829 - 144899
Alignment:
| Q |
320 |
tgtgtcgcatgagaagccttgacaggctttatcggagatagagtgttgacaaatctcaaaaagggagattc |
390 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| |||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
144829 |
tgtgtcacatgagaagccttgacagactttattagagataaagtgttaacaaatctcaaaaggggagattc |
144899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University