View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_30 (Length: 415)
Name: NF6682_2D_low_30
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_30 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 34448481 - 34448764
Alignment:
| Q |
19 |
atgttgtctaacttgagacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatatt |
118 |
Q |
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| T |
34448481 |
atgttgtctaacttgagacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatatt |
34448580 |
T |
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| Q |
119 |
gcttcatgcaacattccactgcagaagcaacatgcactctttcttgctcaaactataaataaagcaaatacaaaaatatgtatacttcagttttgttaga |
218 |
Q |
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| T |
34448581 |
gcttcatgcaacattccactgcagaagcaacatgcactctttcttgctcaaactataaataaagcaaatacaaaaacatgtatacttcagttttgtaaga |
34448680 |
T |
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| Q |
219 |
tactttcgatgtactttcatatgcagatacaaaatatgcagtaccttatgtgaggatatgtcatccgcgagtctaccatgagcc |
302 |
Q |
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| T |
34448681 |
tactttcgatgtactttcatatgcagatacaaaatatgcagtaccttatgtgaggatatgtcatccgcgagtctaccatgagcc |
34448764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 34459768 - 34459876
Alignment:
| Q |
73 |
tccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactctttcttgctcaaact |
172 |
Q |
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| T |
34459768 |
tccttgagaatgagtttataagcctcttcttgtgatatgtcatattgcttcatgcaacaatcaactgcagaggcaacatgcaccctttcgtgctcaaact |
34459867 |
T |
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| Q |
173 |
ataaataaa |
181 |
Q |
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| T |
34459868 |
gtaaataaa |
34459876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 34473753 - 34473906
Alignment:
| Q |
19 |
atgttgtctaacttgagacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatatt |
118 |
Q |
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| T |
34473753 |
atgtagtctaacttgaggaactcttcatttatatccatccaaaaatcttcaatgtccttgttaatgtgcttataggcctcttcttgtgacatgttgtatt |
34473852 |
T |
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| Q |
119 |
gcttcatgcaacattccactgcagaagcaacatgcactctttcttgctcaaact |
172 |
Q |
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| T |
34473853 |
gcttcatgcaacattcaactgctgcagcaacatgcaccctttgctgctcaaact |
34473906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 34483935 - 34483977
Alignment:
| Q |
142 |
gaagcaacatgcactctttcttgctcaaactataaataaagca |
184 |
Q |
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| T |
34483935 |
gaagcaacatgcactctttgctgctcaaactataaataaagca |
34483977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 299 - 415
Target Start/End: Original strand, 24169112 - 24169228
Alignment:
| Q |
299 |
agcctgaagaagtctgagtccaaagtgatcaaaaaggaaagcaagaacattggtagtcttggtttcttcattcaaaaactcttcagataggtgaagaaat |
398 |
Q |
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| T |
24169112 |
agcctgaagaagtctgagtccaaagtgatcaaaaaggaaagcaagaacattggtagtcttggtttcttcattcaaaaactcttcagataggtgaagaaat |
24169211 |
T |
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| Q |
399 |
tcaagcagatgttcata |
415 |
Q |
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| T |
24169212 |
tcaagcagatgttcata |
24169228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 6132311 - 6132153
Alignment:
| Q |
24 |
gtctaacttgagacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttc |
123 |
Q |
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|||||| |||||||||||||||||||| || ||||||||| ||||| || || |||||| || ||||| || ||| |||||| |||||||||||| |
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| T |
6132311 |
gtctaatttgagacactcttcattcataactatccaataatcttcgatctctttcagaatgagtttgtaagcttcctcttgtgacatatcatattgcttc |
6132212 |
T |
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| Q |
124 |
atgcaacattccactgcagaagcaacatgcactctttcttgctcaaactataaataaag |
182 |
Q |
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| T |
6132211 |
atgcaacattcaactgcagaagcaacatgcactctttgctgctcaaactgtaaacaaag |
6132153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 6135884 - 6135842
Alignment:
| Q |
107 |
acatgtcatattgcttcatgcaacattccactgcagaagcaac |
149 |
Q |
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| T |
6135884 |
acatgtcatattgcttcatgcaacattcaactgtagaagcaac |
6135842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 1593287 - 1593371
Alignment:
| Q |
88 |
ttataagcctcttctcctgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactctttcttgctcaaact |
172 |
Q |
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| T |
1593287 |
ttatatgcatcttctggtgacatgttgtattgcttcatgcaacactcaactgctgaagcaacatgctccctttgttgctcaaact |
1593371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 8063 - 8031
Alignment:
| Q |
260 |
taccttatgtgaggatatgtcatccgcgagtct |
292 |
Q |
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| T |
8063 |
taccttatgtgaggatatatcatccgcgagtct |
8031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 4640053 - 4640085
Alignment:
| Q |
260 |
taccttatgtgaggatatgtcatccgcgagtct |
292 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
4640053 |
taccttatgtgaggatatatcatccgcgagtct |
4640085 |
T |
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