View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_33 (Length: 414)
Name: NF6682_2D_low_33
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 38626476 - 38626070
Alignment:
| Q |
1 |
caaaggtctggaggtagagaccacatatttcctatgacacatcccaatgcatttaggttcttgcgagatcagctgaacgagtctattcaggttgttgttg |
100 |
Q |
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| T |
38626476 |
caaaggtctggaggtagagaccacatatttcctatgacacatcccaatgcatttaggttcttgcgagatcagctgaacgagtctattcaggttgttgttg |
38626377 |
T |
|
| Q |
101 |
attttggccgttaccccaaaggtgtatctaatttgaacaaggatgtagtgtccccatatgtacatttcgtagattcttatgtagatgatgagcctcatga |
200 |
Q |
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| T |
38626376 |
attttggccgttaccccaaaggtgtatctaatttgaacaaggatgtagtgtccccatatgtacatttcgtagattcttatgtagatgatgagcctcatga |
38626277 |
T |
|
| Q |
201 |
tccgtttgagtctcgcaccacactgcnnnnnnncagaggggggacacaccgtaaggatgtatgtatttatgttgatgagatttaattgaaggaataatgc |
300 |
Q |
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| T |
38626276 |
tccgtttgagtctcgcaccacactgctttttttcagaggggggacacaccgtaaggatgtatgtatttatgttgatgagatttaattgaaggaataatgc |
38626177 |
T |
|
| Q |
301 |
tgacctccttatacttacaggcaacttgatttttggggtgtgtcatgtttgcagaaaggcattgttcgtgctaaattcacaaagatattagctggttttg |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38626176 |
tgacttccttatacttacaggcaacttgatttttggggtgtgtcatgtttgcagaaaggcattgttcgtgctaaattcacaaagatattagctggttttg |
38626077 |
T |
|
| Q |
401 |
atgatgt |
407 |
Q |
| |
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| T |
38626076 |
atgatgt |
38626070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 34622397 - 34622607
Alignment:
| Q |
16 |
agagaccacatatttcctatgacacatcccaatgcatttaggttcttgcgagatcagctgaacgagtctattcaggttgttgttgattttggccgttacc |
115 |
Q |
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|||||||| |||||||||||||||| |||||||| ||||| ||| | || |||| |||| || ||||||| |||||||| ||||||||||| |||| |
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| T |
34622397 |
agagaccatgtatttcctatgacacaccccaatgcctttagattcctacgtaatcaattgaatgatactattcaagttgttgtggattttggccgctacc |
34622496 |
T |
|
| Q |
116 |
ccaaaggtgtatctaatttgaacaaggatgtagtgtccccatatgtacatttcgtagattcttatgtagatgatgagcctcatgatccgtttgagtctcg |
215 |
Q |
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| || || | ||||||||||| || ||||| |||||||| ||||| ||| | || ||||||||| ||||||||| ||||| ||||||| ||| ||| |
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| T |
34622497 |
ctaagggcatgtctaatttgaataaagatgtggtgtccccgtatgttcatgttgtggattcttatacagatgatgaacctcaagatccgtacgagattcg |
34622596 |
T |
|
| Q |
216 |
caccacactgc |
226 |
Q |
| |
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| ||||||||| |
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| T |
34622597 |
ctccacactgc |
34622607 |
T |
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