View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6682_2D_low_34 (Length: 409)
Name: NF6682_2D_low_34
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_34 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 30297043 - 30296654
Alignment:
| Q |
1 |
aagcctgttagaagtccaagttgtatgaatgattgagaagcaagagctgtttctaaggactgtacattcttgattcttgcttcaatgataagtgctctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30297043 |
aagcctgttagaagtccaagttgtatgaatgattgagaagcaagagctgtttctaaggactgtacattcttgattcttgcttcaatgataagtgctctct |
30296944 |
T |
|
| Q |
101 |
ctaagccgctaagaacaaggtataactgtccgtagagaaatacatatattcctattactgatatctgtgaagaaatgcaatagatttatatcagtcaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30296943 |
ctaagccgctaagaacaaggtataactgtccgtagagaaatacatatattcctattactgatatctgtgaagaaatgcaatagatttatatcagtcaaaa |
30296844 |
T |
|
| Q |
201 |
ttgcattatgtaaagaatctatacatgtcatacttctcttcatataggcaacaggatagtg-aatatatcatagagaagaatattatggttcagtgaaat |
299 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30296843 |
ttgcattatg--aagaatctatacatgtcatacttctcttcatataggcaacaggatagtgaaatatatcatagagaagaatattatggttcagtgaaat |
30296746 |
T |
|
| Q |
300 |
taccaagctgctgaagtaaaatccaattgtagtgaaataacaagatagcatcctgaaaaaatcgaattgtcttgcaaggcggaatatgtcac |
391 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30296745 |
taccaagctgctgaagtaaaatccaatagtagtgaaataacaagatagcatcctaaaaaaatcgaattgtcttgcaaggcggaatatgtcac |
30296654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 52617621 - 52617563
Alignment:
| Q |
308 |
tgctgaagtaaaatccaattgtagtgaaataacaagatagcatcctgaaaaaatcgaat |
366 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| ||||| ||||| || |||||| |
|
|
| T |
52617621 |
tgctgaagtaaaacccaattgttgtgaaataacaagacagcattctgaagaagtcgaat |
52617563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University