View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6682_2D_low_40 (Length: 371)

Name: NF6682_2D_low_40
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6682_2D_low_40
NF6682_2D_low_40
[»] chr4 (2 HSPs)
chr4 (12-233)||(14131436-14131657)
chr4 (231-370)||(14131309-14131445)
[»] scaffold0014 (1 HSPs)
scaffold0014 (52-184)||(173633-173765)
[»] chr8 (1 HSPs)
chr8 (52-184)||(44198017-44198149)
[»] chr7 (5 HSPs)
chr7 (52-236)||(34529788-34529972)
chr7 (52-236)||(45574862-45575046)
chr7 (52-184)||(48513469-48513601)
chr7 (52-236)||(17990328-17990512)
chr7 (52-184)||(42105265-42105397)
[»] chr6 (1 HSPs)
chr6 (52-184)||(29651894-29652026)
[»] chr5 (2 HSPs)
chr5 (52-184)||(36662646-36662778)
chr5 (52-184)||(36679000-36679132)
[»] chr3 (3 HSPs)
chr3 (52-236)||(35028994-35029178)
chr3 (52-184)||(38327728-38327860)
chr3 (52-176)||(46073478-46073602)
[»] chr2 (2 HSPs)
chr2 (52-184)||(12504840-12504972)
chr2 (52-184)||(14680954-14681086)
[»] chr1 (2 HSPs)
chr1 (52-184)||(52609047-52609179)
chr1 (52-117)||(29887139-29887204)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 14131657 - 14131436
Alignment:
Q  12 tcatcccaaacctgatacgaatgacggaagccaacgaagtgcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgtt 111  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14131657 tcatcccaaacctgatatgaatgacggaagcgaacgaagtgcgaaagtagcgaagaagagatagtggagagaatccaagtgcaaagcaaggaatcttgtt 14131558  T
Q  112 cctccctcacagtatatgccgcattctcagttccaactttgcgcgcagcatcattgagaaaaaccggaggaatgtgctgcgaaacaacatagtgcaccat 211  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  14131557 cctccctcacagtatatgccgcattctcagtttcaacttcgcgcgcagcatcattgaaaaaaaccggaggaatttgctgcgaaacaacatagtgcaccat 14131458  T
Q  212 ttttgtacctcacaacactcct 233  Q
    ||||||||||| ||||||||||    
T  14131457 ttttgtacctcgcaacactcct 14131436  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 231 - 370
Target Start/End: Original strand, 14131309 - 14131445
Alignment:
Q  231 ccttctcctacgcaaacgaacgccactgaagcacaacccatcattgctgcggcttcaaaagcgttcaagcaagtcctttcaatcaaacttgacgatatac 330  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||  ||||    
T  14131309 ccttctcctacgcaaacgaacaccactgaagcacaatgcatcattgctgcggctttaaaagcattcaagcaagtcctttcagtcaaacttgacg--atac 14131406  T
Q  331 aaactacctccaatggaatcaacaagtagaaggagtgttg 370  Q
    |||||||||| |||||||| ||||||||| ||||||||||    
T  14131407 aaactacctcaaatggaataaacaagtag-aggagtgttg 14131445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 173765 - 173633
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    |||||||||||||||  || || || || |||||||| ||||| ||||| ||||||||||| ||||   |||| || || | |||||| |||||| |||     
T  173765 gcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttc 173666  T
Q  152 gcgcgcagcatcattgagaaaaaccggaggaat 184  Q
    |||||| |||||  ||||||||||||| |||||    
T  173665 gcgcgctgcatctgtgagaaaaaccggtggaat 173633  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 44198149 - 44198017
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    |||||||||||||||  || || || || |||||||| ||||| ||||| ||||||||||| ||||   |||| || || | |||||| |||||| |||     
T  44198149 gcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttc 44198050  T
Q  152 gcgcgcagcatcattgagaaaaaccggaggaat 184  Q
    |||||| |||||  ||||||||||||| |||||    
T  44198049 gcgcgctgcatctgtgagaaaaaccggtggaat 44198017  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 236
Target Start/End: Original strand, 34529788 - 34529972
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    |||| ||||| ||||| ||||| ||||| |||||||| || || ||||| |||||||| || ||||   ||||||| |||| ||||||||||||| | |     
T  34529788 gcgatagtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctc 34529887  T
Q  152 gcgcgcagcatcattgagaaaaaccggaggaatgtgctgcgaaacaacatagtgcaccatttttgtacctcacaacactccttct 236  Q
     ||||| || || ||||| |||||||| || || ||| | |||||||| |   ||||||||||||| || |  ||||||||||||    
T  34529888 acgcgccgcgtcgttgaggaaaaccggtgggatctgcggtgaaacaacgtgacgcaccatttttgtgccgcgtaacactccttct 34529972  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 236
Target Start/End: Original strand, 45574862 - 45575046
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    |||| ||||| ||||| ||||| ||||| |||||||| || || ||||| |||||||| || ||||   ||||||| |||| ||||||||||||| | |     
T  45574862 gcgatagtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctc 45574961  T
Q  152 gcgcgcagcatcattgagaaaaaccggaggaatgtgctgcgaaacaacatagtgcaccatttttgtacctcacaacactccttct 236  Q
     ||||| || || ||||| |||||||| || || ||| | |||||||| |   ||||||||||||| || |  ||||||||||||    
T  45574962 acgcgccgcgtcgttgaggaaaaccggtgggatctgcggtgaaacaacgtgacgcaccatttttgtgccgcgtaacactccttct 45575046  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 48513469 - 48513601
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    |||||||||||||||  || || || || |||||||| ||||| ||||| ||||||||||| ||||   |||| || || | |||||| |||||| |||     
T  48513469 gcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttc 48513568  T
Q  152 gcgcgcagcatcattgagaaaaaccggaggaat 184  Q
    |||||| |||||  ||||||||||||| |||||    
T  48513569 gcgcgctgcatctgtgagaaaaaccggtggaat 48513601  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 236
Target Start/End: Complemental strand, 17990512 - 17990328
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    |||| ||||| ||||| ||||| ||||| |||||||| || || ||||| |||||||| || ||||   | ||||| |||| ||||||| ||||| | |     
T  17990512 gcgatagtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcggtatacgccggattctcaattccagcctc 17990413  T
Q  152 gcgcgcagcatcattgagaaaaaccggaggaatgtgctgcgaaacaacatagtgcaccatttttgtacctcacaacactccttct 236  Q
     ||||| || || ||||| |||||||| || || ||| | |||||||| |   ||||||||||||| || |  ||||||||||||    
T  17990412 acgcgccgcgtcgttgaggaaaaccggtgggatctgcggtgaaacaacgtgacgcaccatttttgtgccgcgtaacactccttct 17990328  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 42105397 - 42105265
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    ||||||||||| |||  || || || || |||||||| ||||| ||||| ||||||||||| ||||   |||| || || | |||||| |||||| |||     
T  42105397 gcgaaagtagccaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctcggttccagcttc 42105298  T
Q  152 gcgcgcagcatcattgagaaaaaccggaggaat 184  Q
    |||||| |||||  ||||| ||||||| |||||    
T  42105297 gcgcgctgcatctgtgagataaaccggtggaat 42105265  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 29652026 - 29651894
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    |||||||||||||||  || || || || |||||||| ||||| ||||| ||||||||||| ||||   |||| || || | |||||| |||||| |||     
T  29652026 gcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttc 29651927  T
Q  152 gcgcgcagcatcattgagaaaaaccggaggaat 184  Q
    |||||| |||||  ||||||||||||| |||||    
T  29651926 gcgcgctgcatctgtgagaaaaaccggtggaat 29651894  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 36662778 - 36662646
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    |||||||||||||||  || || || || |||||||| ||||| ||||| ||||||||||| ||||   |||| || || | |||||| |||||| |||     
T  36662778 gcgaaagtagcgaagccgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttc 36662679  T
Q  152 gcgcgcagcatcattgagaaaaaccggaggaat 184  Q
    |||||| |||||  ||||||||||||| |||||    
T  36662678 gcgcgctgcatctgtgagaaaaaccggtggaat 36662646  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 36679000 - 36679132
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    |||||||||||||||  || || || || |||||||| ||||| ||||| ||||||||||| ||||   |||| || || | |||||| |||||| |||     
T  36679000 gcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttc 36679099  T
Q  152 gcgcgcagcatcattgagaaaaaccggaggaat 184  Q
    |||||| |||||  ||||||||||||| |||||    
T  36679100 gcgcgctgcatctgtgagaaaaaccggtggaat 36679132  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 236
Target Start/End: Original strand, 35028994 - 35029178
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    |||| ||||| ||||| ||||| ||||| |||||||| || || ||||| |||||||| || ||||   ||||||| |||| ||||||||||||| | |     
T  35028994 gcgatagtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctc 35029093  T
Q  152 gcgcgcagcatcattgagaaaaaccggaggaatgtgctgcgaaacaacatagtgcaccatttttgtacctcacaacactccttct 236  Q
     ||||| || || ||||| |||||||| || || ||| | |||||||| |   ||||||||||||| || |  ||||||||||||    
T  35029094 acgcgccgcgtcgttgaggaaaaccggtgggatctgcggtgaaacaacgtgacgcaccatttttgtgccgcgtaacactccttct 35029178  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 38327728 - 38327860
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    |||||||||||||||  || || || || |||||||| ||||| ||||| ||||||||||| ||||   |||| || || | |||||| |||||| |||     
T  38327728 gcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttc 38327827  T
Q  152 gcgcgcagcatcattgagaaaaaccggaggaat 184  Q
    |||||| |||||  ||||||||||||| |||||    
T  38327828 gcgcgctgcatctgtgagaaaaaccggtggaat 38327860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 46073602 - 46073478
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    |||||||||||||||  || || || || |||||||| ||||| ||||| ||||||||||| ||||   |||| || || | |||||| |||||| |||     
T  46073602 gcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttc 46073503  T
Q  152 gcgcgcagcatcattgagaaaaacc 176  Q
    |||||| |||||  ||||| |||||    
T  46073502 gcgcgctgcatctgtgagataaacc 46073478  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 12504972 - 12504840
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    |||||||||||||||  || || || || |||||||| ||||| ||||| ||||||||||| ||||   |||| || || | |||||| |||||| |||     
T  12504972 gcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttc 12504873  T
Q  152 gcgcgcagcatcattgagaaaaaccggaggaat 184  Q
    |||||| |||||  ||||||||||||| |||||    
T  12504872 gcgcgctgcatctgtgagaaaaaccggtggaat 12504840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 14680954 - 14681086
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    |||||||||||||||  || || || || |||||||| ||||| ||||| ||||||||||| ||||   |||| || || | |||||| |||||| |||     
T  14680954 gcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttc 14681053  T
Q  152 gcgcgcagcatcattgagaaaaaccggaggaat 184  Q
    |||||| |||||  ||||||||||||| |||||    
T  14681054 gcgcgctgcatctgtgagaaaaaccggtggaat 14681086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 52609047 - 52609179
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccctcacagtatatgccgcattctcagttccaacttt 151  Q
    |||||||||||||||  || || || || |||||||| ||||| ||||| ||||||||||| ||||   |||| || || | |||||| |||||| |||     
T  52609047 gcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttc 52609146  T
Q  152 gcgcgcagcatcattgagaaaaaccggaggaat 184  Q
    |||||| |||||  ||||||||||||| |||||    
T  52609147 gcgcgctgcatctgtgagaaaaaccggtggaat 52609179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 29887204 - 29887139
Alignment:
Q  52 gcgaaagtagcgaagatgagatagtggagagaatccaagtgcaaagcaaggaatcttgttcctccc 117  Q
    ||||||||||||||| ||| || || || |||||||| ||||| ||||| ||||||||||| ||||    
T  29887204 gcgaaagtagcgaaggtgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttccc 29887139  T

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