View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6682_2D_low_53 (Length: 334)
Name: NF6682_2D_low_53
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_53 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 45199076 - 45198776
Alignment:
| Q |
18 |
atgaattagatatattctaagcattactcttacaagctctttttggtgaaagatattggtatttagagattttcacatagactccacacaagctatcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45199076 |
atgaattagatatattctaagcattactcttacaagctctttttggtgaaagatattggtatttagagattttcacatagactccacacaagctatcaaa |
45198977 |
T |
|
| Q |
118 |
gggcatgcaacaattaaaagtacaacttacgatttgtgaccaaaggactaaagatgttccactatattatctgtcattactaatcataaactcaactatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45198976 |
gggcatgcaacaattaaaagtacaacttacgatttgtgaccaaaggactaaagatgttccactatattatctgtcattactcatcataaactcaactatg |
45198877 |
T |
|
| Q |
218 |
ccattactaa---attccaaatatttttctttacctttaatnnnnnnnntcaaaatattttgaaacaatgaacactcaacaaataaatgtcgagatgatt |
314 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45198876 |
ccattactaaattattccaaatatttttctttacctttaataaaaaaaatcaaaatattttgaaacaatgaacactcaacaaataaatgtcgagatgatt |
45198777 |
T |
|
| Q |
315 |
c |
315 |
Q |
| |
|
| |
|
|
| T |
45198776 |
c |
45198776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University