View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_56 (Length: 312)
Name: NF6682_2D_low_56
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 2245305 - 2245581
Alignment:
| Q |
21 |
cctacaatacccaaccaaactccaagtacctaaaaatttaccttttagaaaagggtatcaaagttaacaattttgnnnnnnngatatcaaaattgcattt |
120 |
Q |
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| T |
2245305 |
cctacaatatccaaccaaactccaagtacctaaaaatttaccttttagaaaagggtatcaaagttaacaattttgaaaaaaagatatcaaaattgcattt |
2245404 |
T |
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| Q |
121 |
aagccaaactggtatttattaatgatagttgttgcaactaactactactttcatcagctaccatgacatgatcctcaaaactatcgtacaagtgtgttca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245405 |
aagccaaactggtatttattaatgatagttgttgcaactaactactactttcatcagctaccatgacatgatcctcaaaactatcgtacaagtgtgttca |
2245504 |
T |
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| Q |
221 |
caaattagcaagcattgcactttaatgaggatacaagaatgactagaaaattgaacaaaggcaagaatatatgatat |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245505 |
caaattagcaagcattgcactttaatgaggatacaagaatgactagaaaattgaacaaaggcaagaatatatgatat |
2245581 |
T |
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