View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6682_2D_low_58 (Length: 308)
Name: NF6682_2D_low_58
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_58 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 7167951 - 7167712
Alignment:
| Q |
12 |
ccaacaatgtaattttattcaaatgaatatttattcaaaatcattttatgatattatagaaaataggaattaggtttatgacttctgcaaatagtgttga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7167951 |
ccaacaatgtaattttattcaaatgaatatttattcaaaatcattttatgatattatagaaaataggaattaggtttatgacttctgcaaatagtgttga |
7167852 |
T |
|
| Q |
112 |
ctgcttgaatgagtggcagttgattcgcttgaaaagattatcctttttcagttctgttggttcaattccttaaatctctgtgcaatctgaatttgttgtg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7167851 |
ctgcttgaatgagtggcagttgattcgcttgaaaagattattctttttcagttctgttggctcaattccttaaatctctgtgcaatctgaatttgttgag |
7167752 |
T |
|
| Q |
212 |
gttaaacatatatagagtttgtttaggctggttgcacttg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7167751 |
gttaaacatatatagagtttgtttaggctggttgcacttg |
7167712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 11238648 - 11238905
Alignment:
| Q |
12 |
ccaacaatgtaattttattcaaatgaatatttattcaaaatcattttatgatattatagaaaataggaattaggtttatgacttctgcaaatagtgttga |
111 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| || | | || || ||| || | |||||||||| ||||||| |||||||||||||||| |||| || |
|
|
| T |
11238648 |
ccaacactgtaattttattcaattgaatatttat-cacatttatcttctgaaatcagagaaaatagggattaggtgtatgacttctgcaaattgtgtcga |
11238746 |
T |
|
| Q |
112 |
ctgcttgaatgagtggcagttgattcgcttgaaaagattatcct-ttttcagttctgttggttcaattccttaaatctctgtgcaatctgaatttgttgt |
210 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| || ||||| || |||||||||||||| | |||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
11238747 |
ctgcttgaattagtggcagttgatttgcttgagaa-attattctcttttcagttctgttagctcaattccttgaatctctgtgcaacttgagtttgttga |
11238845 |
T |
|
| Q |
211 |
ggttaaacatatatagagtttgtttaggctggttgcacttgttatagtttttgtctcaaca |
271 |
Q |
| |
|
||| | | | | |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11238846 |
agtt-attagacacagagtttgtttaggctggttgcacttgttataagttttgtctcaaca |
11238905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 120 - 285
Target Start/End: Complemental strand, 7173407 - 7173242
Alignment:
| Q |
120 |
atgagtggcagttgattcgcttgaaaagatta-tcctttttcagttctgttggttcaattccttaaatctctgtgcaatctgaatttgttgtggttaaac |
218 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| | |||||||| ||||||| | ||| ||||| ||||| |||| ||| ||| || ||| |||||||| |
|
|
| T |
7173407 |
atgagtagcagttgatttgcttgaaaagattaattctttttcatttctgttagctcatttcct-aaatcgctgttcaacttgagttagttaaggttaaac |
7173309 |
T |
|
| Q |
219 |
atatatagagtttgtttaggctggttgcacttgttatagtttttgtctcaacatataagtgtacttg |
285 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
7173308 |
atatatagagtttgtttatgctggttgcacttgttatagcttttgtctcaacatataagtgcacttg |
7173242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 24725197 - 24725271
Alignment:
| Q |
211 |
ggttaaacatatatagagtttgtttaggctggttgcacttgttatagtttttgtctcaacatataagtgtacttg |
285 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||| ||| ||||| |
|
|
| T |
24725197 |
ggtttaacttatattgagtttgtttaggctggtttcacttgttatagcttttgtctcaacatataggtgcacttg |
24725271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 190
Target Start/End: Original strand, 24724274 - 24724410
Alignment:
| Q |
54 |
attttatgatattatagaaaataggaattaggtttatgacttctgcaaatagtgttgactgcttgaatgagtggcagttgattcgcttgaaaagattatc |
153 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || |||||| |||| |||| |||| ||||||| ||||| ||| ||| ||||||||||||||| |
|
|
| T |
24724274 |
attttatgtaatcatagaaaataggaattaggtctacagcttctgtaaattgtgtcgactacttgaattagtggtagtagatatgcttgaaaagattatt |
24724373 |
T |
|
| Q |
154 |
ctttttcagttctgttggttcaattccttaaatctct |
190 |
Q |
| |
|
|||||| ||||||||| | | ||||||| ||||||| |
|
|
| T |
24724374 |
cttttttagttctgttagcttaattcctataatctct |
24724410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University