View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6682_2D_low_63 (Length: 283)
Name: NF6682_2D_low_63
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_63 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 266
Target Start/End: Complemental strand, 25876573 - 25876329
Alignment:
| Q |
22 |
tgtgtctggatcagtgcttcaaaggtggtaccttattcaccactgcatcacttaaacacatcggcagcaccctgcaaaaatactcccttaacttaatttt |
121 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25876573 |
tgtgtctgtatcagtgcttcataggtggtaccttattcaccactgcatcacttaaacacatcggcagcaccctgcaaaaatactcccttaacttaatttt |
25876474 |
T |
|
| Q |
122 |
aaataacgattctgtggtttatcttttcttttacgtaatttttatcattttgctctattcgcatatggattttcaagcttcaaatctaactctttcatga |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25876473 |
aaataacgattctgtggtttatcttttcttttacgtaatttttatcattttgctccgttcgcatatggattttcaagcttcaaatctaactctttcatga |
25876374 |
T |
|
| Q |
222 |
ttttcgacaaatctatggtcttccactcatgtttatttcatatga |
266 |
Q |
| |
|
|||||| ||||| || |||||| |||||||||||||||||||||| |
|
|
| T |
25876373 |
ttttcggcaaatttacggtctttcactcatgtttatttcatatga |
25876329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 206
Target Start/End: Complemental strand, 44533792 - 44533691
Alignment:
| Q |
105 |
tcccttaacttaattttaaataacgattctgtggtttatcttttcttttacgtaatttttatcattttgctctattcgcatatggattttcaagcttcaa |
204 |
Q |
| |
|
|||||||||||||||| | ||||| ||| ||| |||||||||| ||| |||| |||||| || ||||| || || |||||||||||||||||| |||| |
|
|
| T |
44533792 |
tcccttaacttaatttcagataaccattttgtcctttatcttttttttcacgttatttttgtccttttggtccgtttgcatatggattttcaagcatcaa |
44533693 |
T |
|
| Q |
205 |
at |
206 |
Q |
| |
|
|| |
|
|
| T |
44533692 |
at |
44533691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 12649562 - 12649603
Alignment:
| Q |
169 |
ttttgctctattcgcatatggattttcaagcttcaaatctaa |
210 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
12649562 |
ttttggtctattttcatatggattttcaagcttcaaatctaa |
12649603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 5919579 - 5919677
Alignment:
| Q |
109 |
ttaacttaattttaaataacgattctgtggtttatcttttcttttacgtaatttttatc--attttgctctattcgcatatggattttcaagcttcaaat |
206 |
Q |
| |
|
|||||||||||| | ||||||||| || ||||||| ||||||| |||| |||||| || ||||| |||||| ||||||| |||||||||| |||||| |
|
|
| T |
5919579 |
ttaacttaatttcagataacgattgcgtcgtttatc-tttctttcacgtcatttttgtctttttttgatctatttgcatatgaattttcaagcatcaaat |
5919677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 17040149 - 17040100
Alignment:
| Q |
160 |
tttttatcattttgctctattcgcatatggattttcaagcttcaaatcta |
209 |
Q |
| |
|
|||||||| ||||| | ||| |||||||||||||||||||||||||||| |
|
|
| T |
17040149 |
tttttatccttttggttcatttgcatatggattttcaagcttcaaatcta |
17040100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 35206836 - 35206885
Alignment:
| Q |
161 |
ttttatcattttgctctattcgcatatggattttcaagcttcaaatctaa |
210 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||||||| ||||||||||| |
|
|
| T |
35206836 |
ttttatcattttggtctattttcatatgtattttcaaggttcaaatctaa |
35206885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 43979282 - 43979311
Alignment:
| Q |
107 |
ccttaacttaattttaaataacgattctgt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
43979282 |
ccttaacttaattttaaataacgattctgt |
43979311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Original strand, 34493610 - 34493638
Alignment:
| Q |
105 |
tcccttaacttaattttaaataacgattc |
133 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34493610 |
tcccttaacttaattttaaataacgattc |
34493638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University