View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_68 (Length: 273)
Name: NF6682_2D_low_68
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 1742203 - 1742460
Alignment:
| Q |
1 |
acacatgcaaggtatttattcgtataatatagaacatagaacaaacaagacatgttatatgtcacattgaaaaatcaaccataaaaatcaacaccagaag |
100 |
Q |
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| T |
1742203 |
acacatgcaaggtatttattagtataatatagaacatagaacaaacaagacttgttatatgtcacattgaaaaatcaaccataaaaatcaacaccagaag |
1742302 |
T |
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| Q |
101 |
gtgtgattatttttcttaaggaaggccttgcatgcattagtccacaaacaaaatcaccatccaccaaactgcaattcctcaaatttaactctttcaatgc |
200 |
Q |
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| T |
1742303 |
gagtgattatttttctcaaggaaggccttgcatgcattagtccacaaacaaaatcatcatccaccaaactgcaattcctcaaatttaactctttcaatgc |
1742402 |
T |
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| Q |
201 |
tatgcaattttctattacttcccttactcccttagctgtaacataccaacaattttga |
258 |
Q |
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| T |
1742403 |
tatgcaattttctattacttcccttactcccttagctgtaacataccaacaattttga |
1742460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 2008147 - 2007879
Alignment:
| Q |
1 |
acacatgcaaggtatttattcgtataatatagaacatagaacaaacaagacatgttatatgtcacattgaaa----------aatcaaccataaaaatca |
90 |
Q |
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| T |
2008147 |
acacatgcaaggtacttattactagaatatataacacataacaaacaatacatgatatatgtcacattgaaattcctctaaaattcagcaataaaaatca |
2008048 |
T |
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| Q |
91 |
acaccagaaggtgtgattatttttcttaaggaaggccttgcatgcattagtccacaaacaaaatcaccatccaccaaactgcaattcct-----caaatt |
185 |
Q |
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| T |
2008047 |
acaccagaaggtgtgattatctttctcaaggaaggccttgtatgtattagttcacaaacaaaatcatcattcagcaaactacaattccttactcccaatt |
2007948 |
T |
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| Q |
186 |
taactctttcaatgctatgcaattttctattacttcccttactcccttagctgtaacataccaacaatt |
254 |
Q |
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| T |
2007947 |
taactcttttaatgctgtacacttttctaatacttcccttactcccttagttgtaacatgccaacaatt |
2007879 |
T |
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