View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_70 (Length: 266)
Name: NF6682_2D_low_70
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_70 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 8816400 - 8816646
Alignment:
| Q |
20 |
ccttgttggcctaggttctagcttatgcaaaatgtaaaatgtactcatcacaaataacccttttggccctatttctgttaatgttttactctatcttgtg |
119 |
Q |
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| T |
8816400 |
ccttgttggcctaggttctagcttatgcaaaatgtaaaatgtactcatcacaaataacccttttggccctatttctgttaatgttttactctatcttgcg |
8816499 |
T |
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| Q |
120 |
tttttaattggccctgtttaacacttcacaatgaacacatcacaatcaaatcttggaaaattttgagcaagtttccaaaaaatgcaaacacattacactg |
219 |
Q |
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| T |
8816500 |
tttttaattggccctgtttaacacttcagaatgaacacatcacaatcaaatcttggaaaattttgagcaagtttccaaaaaatgcaaacacattacactg |
8816599 |
T |
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| Q |
220 |
ctctcaaagtaattaagactcttaagagtaggtcgcttaaaattatc |
266 |
Q |
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| T |
8816600 |
ctctcaaagtaattcagactcttaagagtaggtcgcttcaaattatc |
8816646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 46 - 256
Target Start/End: Complemental strand, 8620880 - 8620673
Alignment:
| Q |
46 |
gcaaaatgtaaaatgtactcatcacaaataacccttttggccctatttctgttaatgttttactctatcttgtgtttttaattggccctgtttaacactt |
145 |
Q |
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| T |
8620880 |
gcaaaatgtaaaatgtactcatcacaaataacccttttggccctatttctgttaatgttttactct--cttgagtttttaattggccttgtttaacactt |
8620783 |
T |
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| Q |
146 |
cacaatgaacacatcacaatcaaatcttggaaaattttgagcaagtttccaaaaaatgcaaacacattacactgctctcaaagtaattaagactcttaag |
245 |
Q |
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| T |
8620782 |
cacagtgaacacatcacaatcaaatcgtggaaaattttgagcaagtttccaaaaaatgcaaacacattacactgctctcaaagtaattaagaatc-taag |
8620684 |
T |
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| Q |
246 |
agtaggtcgct |
256 |
Q |
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| T |
8620683 |
agtaggtcgct |
8620673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 46 - 250
Target Start/End: Original strand, 8817446 - 8817646
Alignment:
| Q |
46 |
gcaaaatgtaaaatgtactcatcacaaataacccttttggccctatttctgttaatgttttactctatcttgtgtttttaattggccctgtttaacactt |
145 |
Q |
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| T |
8817446 |
gcaaaatgtaaaatgtacccgtcacaaataacccttttggccctatttctgttaatgttttactcaatcttgagtttttaattggccctgtttaacactt |
8817545 |
T |
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| Q |
146 |
cacaatgaacacatcacaatcaaatcttggaaaattttgagcaagtttccaaaaaatgcaaacacattacactgc--tctcaaagtaattaagactctta |
243 |
Q |
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| T |
8817546 |
cacaatgaacacatcacaatcaaatcttggaaaattttaagcaagttt-----aaatgcaaagacattacactgctttcacaaagtaattaagactc-ta |
8817639 |
T |
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| Q |
244 |
agagtag |
250 |
Q |
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| T |
8817640 |
agagtag |
8817646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 8420964 - 8420871
Alignment:
| Q |
46 |
gcaaaatgtaaaatgtactcatcacaaataacccttttggccctatttctgttaatgttttactctatcttgtgtttttaattggccctgttta |
139 |
Q |
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||||||||||||| ||| ||||||||||||||| ||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| |
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| T |
8420964 |
gcaaaatgtaaaaagtaatcatcacaaataaccttttatgccctatttctgttagtattttactctatcttgagtttttaattggccctgttta |
8420871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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