View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6682_2D_low_72 (Length: 261)

Name: NF6682_2D_low_72
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6682_2D_low_72
NF6682_2D_low_72
[»] chr8 (3 HSPs)
chr8 (14-188)||(39370264-39370437)
chr8 (213-261)||(39370424-39370472)
chr8 (174-223)||(32496719-32496767)
[»] chr2 (1 HSPs)
chr2 (166-226)||(37883016-37883075)
[»] chr7 (1 HSPs)
chr7 (177-225)||(27048996-27049043)
[»] chr1 (1 HSPs)
chr1 (175-251)||(9687435-9687510)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 39370264 - 39370437
Alignment:
Q  14 tggacatcattataccccactcccccacctgaactatcaagccaacttttttctcctttctttggtgaagaattgtttgtaaagcaaccagagaaaatct 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39370264 tggacctcattataccccactcccccacctgaactatcaagccaacttttttctcctttctttggtgaagaattgtttgtaaagcaacctgagaaaatct 39370363  T
Q  114 ccacacaagggnnnnnnnnnctcaataaaaatttattactcaacctgaatgatataagaacaaaattgcaaaccc 188  Q
     ||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39370364 tcacacaaggg-aaaaaaaactcaataaaaatttattactcaacctgaatgatataagaacaaaattgcaaaccc 39370437  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 39370424 - 39370472
Alignment:
Q  213 aaaattgcaaaccccctcaagatacacaattatccaagctcccaatgca 261  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39370424 aaaattgcaaaccccatcaagatacacaattatccaagctcccaatgca 39370472  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 32496719 - 32496767
Alignment:
Q  174 caaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaa 223  Q
    |||||||||||||| ||||||||| ||||| |||||||| ||||||||||    
T  32496719 caaaattgcaaacc-tctcaattataatttttgcacagagaaattgcaaa 32496767  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 37883016 - 37883075
Alignment:
Q  166 tataagaacaaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaaccc 226  Q
    |||||| ||||||||||||||| |||| |||||||||| ||||  ||||||||||||||||    
T  37883016 tataaggacaaaattgcaaacc-tctcgattacaatttttgcatggaaaaattgcaaaccc 37883075  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 27048996 - 27049043
Alignment:
Q  177 aattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaacc 225  Q
    ||||||||||| |||||||| |||||| ||||| |||||||||||||||    
T  27048996 aattgcaaacc-tctcaattgcaatttttgcacggaaaaattgcaaacc 27049043  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 9687435 - 9687510
Alignment:
Q  175 aaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaaccccctcaagatacacaattatccaagc 251  Q
    |||||||||||||||||||||||  || | ||||  | |||||||||||||| ||||||| |||||| ||| |||||    
T  9687435 aaaattgcaaaccctctcaattaatatctttgca-tggaaaattgcaaaccctctcaagacacacaactattcaagc 9687510  T

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