View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_75 (Length: 257)
Name: NF6682_2D_low_75
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_75 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 41 - 225
Target Start/End: Original strand, 8354857 - 8355040
Alignment:
| Q |
41 |
aaccagcaatttgctttctctatgcagagctataagatnnnnnnntcaaacattaaaaactatagcttagttaagagaatgtgtagtaggcaataataag |
140 |
Q |
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| T |
8354857 |
aaccagcaattttctttctctatgcggagctataagctcacaaa-tcaaatattaaaaactatagcttagttaagagaatgtgtagtaagcaataataag |
8354955 |
T |
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| Q |
141 |
taaaaaccagccaaaactagcaaagctatatcgtagccaagaaatagatagatacttttcccttgtaattgtgaattcctcggaa |
225 |
Q |
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| T |
8354956 |
taaaaaccagccaaaactagcaaaactattgagtagccaagaaatagatagatacttttcccttgtaattgtgaattcctcggaa |
8355040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 8348823 - 8348966
Alignment:
| Q |
43 |
ccagcaatttgctttctctatgcagagctataagatnnnnnnntcaaacattaaaaactatagcttagttaagagaatgtg--tagtaggcaataataag |
140 |
Q |
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| T |
8348823 |
ccaggaatttgctttctctatgcagagctataagctcacaaa-tcaaatattaaaaactatagcttaattaagagaatgtgtgtagtaggcaataataag |
8348921 |
T |
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| Q |
141 |
taaaaaccagccaaaactagcaaagctatatcgtagccaagaaat |
185 |
Q |
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| T |
8348922 |
taaaaaccatccaaaactagcaaagctgtagactagccaagaaat |
8348966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 236
Target Start/End: Original strand, 8410542 - 8410742
Alignment:
| Q |
43 |
ccagcaatttgctttctctatgcagagctataagatnnnnnnntcaaacattaaaaactatagcttagttaagagaatgtgtagtag------gcaataa |
136 |
Q |
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| T |
8410542 |
ccagcaattcgctttctctatgcagagctata-gctcacaaa-tcaaacattaaaaactatatcttaattaagagaatgtgtagtagctataggcaataa |
8410639 |
T |
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| Q |
137 |
t-------aagtaaaaaccagccaaaactagcaaagctatatcgtagccaagaaatagatagatacttttcccttgtaattgtgaattcctcggaattca |
229 |
Q |
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| T |
8410640 |
taattaataagtaaaaaccagccaaaactagcaaagttatagagtagccaagaa----atagatacctttctcttgtaattgtgaattcctcggaactcg |
8410735 |
T |
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| Q |
230 |
agaagtg |
236 |
Q |
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| T |
8410736 |
agaagtg |
8410742 |
T |
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