View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6682_2D_low_8 (Length: 758)

Name: NF6682_2D_low_8
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6682_2D_low_8
NF6682_2D_low_8
[»] chr5 (1 HSPs)
chr5 (5-723)||(25492265-25492984)


Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 5 - 723
Target Start/End: Complemental strand, 25492984 - 25492265
Alignment:
Q  5 tctgaaattataatatgatggccaaacatttctaaacataagtccatgttcattacattagattcatatacatattaccgattctcaaactgcaagcatt 104  Q
    ||||||||||||||||||| | |||||||| ||||||  |||||||||||||||||| |||||||||  ||||||||| |||||||||||||||||||||    
T  25492984 tctgaaattataatatgatagacaaacattgctaaacgcaagtccatgttcattacactagattcattaacatattactgattctcaaactgcaagcatt 25492885  T
Q  105 agcaatcttaagtttaagcatcgttgaaaagtatcatgctccaagatcatatgccttctattaaggagttctctcttttaaacttctttgggtgacttgt 204  Q
    || ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||  ||||||||    
T  25492884 agaaatcttaagtttaagcatcatcgaaaagtatcatgctccaagatcatatgccttctattgaggagttttctcttttaaacttctttgcctgacttgt 25492785  T
Q  205 catttgtgtgcagctcccattattattaaggttgcctagcattcccaatggtaccgtttggtaaaaattaacgccgatggtgttgtgaaaggatcccctg 304  Q
    |||||| ||||||||||| |||||||| ||||| ||||| ||||||| |  ||  ||| |||||||||||||   ||||||  |||||||||||||||||    
T  25492784 catttgcgtgcagctccctttattattcaggtttcctagtattcccattcctatggttgggtaaaaattaacagtgatggt--tgtgaaaggatcccctg 25492687  T
Q  305 gccaatcaggagatggtgctacttttagagatagtagtaaagttgttatgggctgtttctcagcttattttggcattcaagatgtattctttgcccagat 404  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  25492686 gccaatcaggagatggtgctatttttagagatagtagtaaagttattatgggctgtttctcagcttattttggctttcaagatgtattcttttcccagat 25492587  T
Q  405 tactgctgctttgttagctattaagattgctcggagccaaagttggcatagtatttggttgaagtgccactcttctcggcacctttggaacgattggcag 504  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  25492586 tactgctgctttgttagctattaagattgctcggaacaaaagttggcatagtcattggttgaagtgccactcttctcggcacctttggaacgattggcag 25492487  T
Q  505 aagtgcatttattttacatccacttcgctcttgggtttctc-ttgtatttcaagatggaaactattgtgctaacaaaccttttttgggtcttttctaaat 603  Q
    || |||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||    
T  25492486 aattgcatttattttacatcctcttcgctctcgggtttctctttgtatttcaagatggaaactattgagccaacaaacctcttttgggtcttttctaaat 25492387  T
Q  604 g-ttttacttgagggaatctaatgcctaactttattaggctaga-nnnnnnnnncgtaataggtttgtacttcctaattattggtttctttagttttctc 701  Q
    | ||||||||||||||||| ||||||||||||||||||||||||          ||||||||||||| ||||||||||||||||||||||||||||||||    
T  25492386 gtttttacttgagggaatccaatgcctaactttattaggctagattttttttttcgtaataggtttgaacttcctaattattggtttctttagttttctc 25492287  T
Q  702 ttcgaagcttggttgatgtcca 723  Q
    ||||||| |||| | |||||||    
T  25492286 ttcgaagtttggattatgtcca 25492265  T

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