View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6682_2D_low_80 (Length: 252)

Name: NF6682_2D_low_80
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6682_2D_low_80
NF6682_2D_low_80
[»] chr1 (23 HSPs)
chr1 (16-231)||(35295828-35296043)
chr1 (38-222)||(35224916-35225100)
chr1 (42-209)||(35270443-35270610)
chr1 (38-208)||(8638901-8639074)
chr1 (42-211)||(35190379-35190539)
chr1 (38-197)||(35219064-35219226)
chr1 (43-211)||(35263019-35263187)
chr1 (27-193)||(45525459-45525622)
chr1 (108-194)||(35212039-35212125)
chr1 (138-211)||(35276637-35276710)
chr1 (112-211)||(34309426-34309525)
chr1 (113-211)||(35200010-35200108)
chr1 (27-211)||(45531560-45531741)
chr1 (27-197)||(35476294-35476464)
chr1 (106-192)||(35194564-35194650)
chr1 (150-211)||(35147470-35147531)
chr1 (143-197)||(35205017-35205071)
chr1 (107-189)||(35252148-35252230)
chr1 (141-191)||(35208239-35208289)
chr1 (138-184)||(35216078-35216124)
chr1 (138-192)||(35248373-35248427)
chr1 (125-191)||(35281403-35281469)
chr1 (141-210)||(35189417-35189486)
[»] chr3 (7 HSPs)
chr3 (106-210)||(17664560-17664664)
chr3 (106-210)||(19246963-19247067)
chr3 (108-190)||(899766-899848)
chr3 (27-75)||(899884-899932)
chr3 (154-197)||(23331911-23331954)
chr3 (42-71)||(53924392-53924421)
chr3 (151-195)||(53924271-53924315)
[»] chr2 (2 HSPs)
chr2 (141-210)||(33138612-33138681)
chr2 (161-197)||(18558756-18558792)
[»] chr7 (1 HSPs)
chr7 (106-196)||(38631955-38632045)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 35296043 - 35295828
Alignment:
Q  16 ctgcggctgtatgcttaatttccttccttaggcctaacttctattccttcaagaaataaacctgtcttcccctgaccaccctttgtatccataacactca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35296043 ctgcggctgtatgcttaatttccttccttaggcctaacttctattccttcaagaaataaacctgtcttcccctgaccaccctttgtatccataacactca 35295944  T
Q  116 tttggacttcttcatccactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatcctagaac 215  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35295943 tttggacttcttcatctactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatcctagaac 35295844  T
Q  216 tctgttgtgccaccta 231  Q
    ||||||||||||||||    
T  35295843 tctgttgtgccaccta 35295828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 35224916 - 35225100
Alignment:
Q  38 cttccttaggcctaacttctattccttcaagaaataaacctgtcttcccctgaccaccctttgtatccataacactcatttggacttcttcatccactaa 137  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||||  |||||||||||| |||| ||||||||||||||||||||||||||  |||     
T  35224916 cttccttaggcctaacttctattccttcaacaaagaaacctctcttccaatgaccaccctttatatcaataacactcatttggacttcttcatcttctag 35225015  T
Q  138 gcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatcctagaactctgttg 222  Q
    ||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||  ||||||||| ||  |||||||||    
T  35225016 gcctgaaatgaagaactctcccatctcaatctctaaccagccatcgcttctcacattaggacgttgcaatcttaatactctgttg 35225100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 42 - 209
Target Start/End: Original strand, 35270443 - 35270610
Alignment:
Q  42 cttaggcctaacttctattccttcaagaaataaacctgtcttcccctgaccaccctttgtatccataacactcatttggacttcttcatccactaagcct 141  Q
    ||||||||||||||||||||||||||||| || |||| ||||||  | |||||||||||| |  || ||| |||| |||||||||||||   ||| ||||    
T  35270443 cttaggcctaacttctattccttcaagaactagacctctcttccaattaccaccctttgtctgtatcacattcatctggacttcttcattttctatgcct 35270542  T
Q  142 gaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatcc 209  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  35270543 gaattgaagaactcccccatctcaatctccaaccacccatcacttctcacactaggacgttgcaatcc 35270610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 208
Target Start/End: Original strand, 8638901 - 8639074
Alignment:
Q  38 cttccttaggcctaacttctattccttcaagaaataaacctgtcttcccc---tgaccaccctttgtatccataacactcatttggacttcttcatccac 134  Q
    ||||||| |||||||||||||||||||||| ||| |||||| ||||||     | |||| ||||| |  |  ||| |||||||||||||||||||||  |    
T  8638901 cttccttgggcctaacttctattccttcaacaaagaaacctctcttccaagtataaccatcctttatcccagtaatactcatttggacttcttcatcttc 8639000  T
Q  135 taagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatc 208  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||| ||||||||||    
T  8639001 taagcctgaattgaagaactctcccatctcagtctccaaccacccatcacttctcattctaggttgttgcaatc 8639074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 211
Target Start/End: Original strand, 35190379 - 35190539
Alignment:
Q  42 cttaggcctaacttctattccttcaagaaataaacctgtcttcccctgaccaccctttgtatccataacactcatttggacttcttcatccactaagcct 141  Q
    |||||||||||||||||||||||||||||| | |||| ||||||  | |      ||||| ||| ||||| ||||||||||||| || ||   || ||||    
T  35190379 cttaggcctaacttctattccttcaagaaagagacctctcttccaatta------tttgtctccttaacattcatttggacttcatcttc---taggcct 35190469  T
Q  142 gaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatccta 211  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  35190470 gaattgaagaactctccgatctcaatctccaaccacccatcacttctcacactaggacgttgcaatccta 35190539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 35219064 - 35219226
Alignment:
Q  38 cttccttaggcctaacttctattccttcaagaaataaacctgtcttcccctga---ccaccctttgtatccataacactcatttggacttcttcatccac 134  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||||  | |   ||| ||||| |  |  ||| |||||||||||||||||||||       
T  35219064 cttccttaggcctaacttctattccttcaacaaagaaacctctcttccaataataaccatcctttatcccagtaatactcatttggacttcttcatctgg 35219163  T
Q  135 taagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactagg 197  Q
    |||||||||| |||||||||||||||||||| | ||||||||| |||||||||||| ||||||    
T  35219164 taagcctgaaatgaagaactctcccatctcagtttccaaccactcatcacttctcatactagg 35219226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 211
Target Start/End: Original strand, 35263019 - 35263187
Alignment:
Q  43 ttaggcctaacttctattccttcaagaaataaacctgtcttcccctgaccaccctttgtatccataacactcatttggacttcttcatccactaagcctg 142  Q
    |||||||||| |||||||||||||||||| | |||  ||||||  | |||| ||||| | || |  | | |||| |||||||||||||   ||| |||||    
T  35263019 ttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctctaacaaattcatctggacttcttcattttctatgcctg 35263118  T
Q  143 aattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatccta 211  Q
    || |||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  35263119 aactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatccta 35263187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 193
Target Start/End: Original strand, 45525459 - 45525622
Alignment:
Q  27 tgcttaatttccttccttaggcctaacttctattccttcaagaaataaacctgtcttcccctgaccaccctttgtatccataacactcatttggacttct 126  Q
    |||||||||  || ||||||||||||||||||||||||||||||| |||     |||   || |||| ||||| | || ||||||||||| |||||||||    
T  45525459 tgcttaattgtctaccttaggcctaacttctattccttcaagaaagaaattccccttggtctcaccagcctttatctcgataacactcatctggacttct 45525558  T
Q  127 tcatccactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacac 193  Q
    ||||   | | ||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  45525559 tcattttcaaggcctgaattgaa---ctctcccatctcaatctccaaccacccatcacttctcacac 45525622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 35212039 - 35212125
Alignment:
Q  108 aacactcatttggacttcttcatccactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacact 194  Q
    |||||||||||||| |||||||||  | | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35212039 aacactcatttggatttcttcatcttcaaggctagaattgaagaactctcccatctcaatctccaaccacccatcacttctcacact 35212125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 35276637 - 35276710
Alignment:
Q  138 gcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatccta 211  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  35276637 gcctgaattgaagaactcccccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatccta 35276710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 34309426 - 34309525
Alignment:
Q  112 ctcatttggacttcttcatccactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatccta 211  Q
    |||||||||| |||||||||  | | || |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||  ||||||||||||    
T  34309426 ctcatttggatttcttcatcttcaaggcttgaattgaagaactctcccatctcaatctccaaccatccatcacttcttacattaggacgttgcaatccta 34309525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 35200010 - 35200108
Alignment:
Q  113 tcatttggacttcttcatccactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatccta 211  Q
    ||||||| |||||||||||  ||  |||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  35200010 tcatttgaacttcttcatcttcttcgcctgaattgaagaactccccgatttcaatctccaaccacccatcgcttctcacactagggcgttgcaatccta 35200108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 211
Target Start/End: Original strand, 45531560 - 45531741
Alignment:
Q  27 tgcttaatttccttccttaggcctaacttctattccttcaagaaataaacctgtcttccc--ctgaccaccctttgtatcc-ataacactcatttggact 123  Q
    |||||||||  || ||||||||||||||||||||||||||||||| |||      |||||  || |||| ||||| | | | ||||||||||| ||||||    
T  45531560 tgcttaattgtctaccttaggcctaacttctattccttcaagaaagaaa------ttcccgtctcaccagcctttattttcgataacactcatatggact 45531653  T
Q  124 tcttcatccactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatccta 211  Q
    |||||||   | | |||||||||||||||||||||||||||||||||| |||||| | ||||||||  ||||||| |  |||||||||    
T  45531654 tcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacctaccacttctccaactaggccgcggcaatccta 45531741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 35476294 - 35476464
Alignment:
Q  27 tgcttaatttccttccttaggcctaacttctattccttcaagaaataaacctgtcttcccctgaccaccctttgtatccataacactcatttggacttct 126  Q
    |||||||||  |||||||||| ||||||||||||||||||||||| |||  |  ||||  |  | |||| | | | || |||||||| || |||||||||    
T  35476294 tgcttaattgtcttccttaggtctaacttctattccttcaagaaagaaatttcccttcggcaaatcaccatctatctcaataacactaatgtggacttct 35476393  T
Q  127 tcatccactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactagg 197  Q
     || |  | | || | |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35476394 acacctccgaggcataaattaaagaactctcccatctcaatctccaaccacccatcacgtctcacactagg 35476464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 35194564 - 35194650
Alignment:
Q  106 ataacactcatttggacttcttcatccactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcaca 192  Q
    |||||||||||||| |||||||||||  | | || || |||||||||||| ||||| |||||||||||||||||||| |||||||||    
T  35194564 ataacactcatttgcacttcttcatcttcaaggcttggattgaagaactcccccatttcaatctccaaccacccatcgcttctcaca 35194650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 35147470 - 35147531
Alignment:
Q  150 gaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatccta 211  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  35147470 gaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatccta 35147531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 35205017 - 35205071
Alignment:
Q  143 aattgaagaactctcccatctcaatctccaaccacccatcacttctcacactagg 197  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||| ||||    
T  35205017 aattgaaaaaatctcccatctcaatctccaaccacccatcacttctcacattagg 35205071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 35252148 - 35252230
Alignment:
Q  107 taacactcatttggacttcttcatccactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctc 189  Q
    ||||| ||||||||| ||||||||   ||| |||| ||||||||||||| || ||||||||||| ||||||||||||||||||    
T  35252148 taacattcatttggatttcttcatattctatgcctaaattgaagaactccccaatctcaatctcaaaccacccatcacttctc 35252230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 35208239 - 35208289
Alignment:
Q  141 tgaattgaagaactctcccatctcaatctccaaccacccatcacttctcac 191  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||||||||    
T  35208239 tgaattgaagaactccccaatctcaatctccaaccacccatcgcttctcac 35208289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 35216078 - 35216124
Alignment:
Q  138 gcctgaattgaagaactctcccatctcaatctccaaccacccatcac 184  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||    
T  35216078 gcctgaattgaagaactctctgatctcaatctccaaccacccatcac 35216124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 35248373 - 35248427
Alignment:
Q  138 gcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcaca 192  Q
    |||| ||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  35248373 gcctaaattgaagaactcccccatctcaatctcaaaccacccatcgcttctcaca 35248427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 35281403 - 35281469
Alignment:
Q  125 cttcatccactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcac 191  Q
    |||||||  ||| ||||||||||||||||||||||||||| ||||||||  | ||||||||||||||    
T  35281403 cttcatcttctaggcctgaattgaagaactctcccatctcgatctccaaaaatccatcacttctcac 35281469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 35189417 - 35189486
Alignment:
Q  141 tgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatcct 210  Q
    ||||||||||||||| |||||  ||||||||||||||| |||||||||||||| |||   ||||||||||    
T  35189417 tgaattgaagaactcccccattccaatctccaaccacctatcacttctcacacaaggacattgcaatcct 35189486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 17664664 - 17664560
Alignment:
Q  106 ataacactcatttggacttcttcatccactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgca 205  Q
    ||||||||||| ||||||||||||||    | || |||||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||||||  ||||||    
T  17664664 ataacactcatgtggacttcttcatctttgaggcttgaattaaagaattctcccatctcaatctccaaccatccatcacatctaacactaggacgttgca 17664565  T
Q  206 atcct 210  Q
    |||||    
T  17664564 atcct 17664560  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 19247067 - 19246963
Alignment:
Q  106 ataacactcatttggacttcttcatccactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgca 205  Q
    ||||||||||| |||| |||||||||    | || |||||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||||||  ||||||    
T  19247067 ataacactcatgtggatttcttcatctttgaggcttgaattaaagaattctcccatctcaatctccaaccatccatcacatctaacactaggacgttgca 19246968  T
Q  206 atcct 210  Q
    |||||    
T  19246967 atcct 19246963  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 899848 - 899766
Alignment:
Q  108 aacactcatttggacttcttcatccactaagcct-gaattgaagaactctcccatctcaatctccaaccacccatcacttctca 190  Q
    ||||||||||||||||||||| |||   ||| || |||||||| |||||||||||||||||||||||||||||||| |||||||    
T  899848 aacactcatttggacttcttc-tccttcaagtcttgaattgaataactctcccatctcaatctccaaccacccatcgcttctca 899766  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 899932 - 899884
Alignment:
Q  27 tgcttaatttccttccttaggcctaacttctattccttcaagaaataaa 75  Q
    |||||||||| | |||||||||||||||||||||||||||||||| |||    
T  899932 tgcttaattttcctccttaggcctaacttctattccttcaagaaagaaa 899884  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 23331911 - 23331954
Alignment:
Q  154 tctcccatctcaatctccaaccacccatcacttctcacactagg 197  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||    
T  23331911 tctcccatctcaatctccaaccacccatcgcttctcacattagg 23331954  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 53924421 - 53924392
Alignment:
Q  42 cttaggcctaacttctattccttcaagaaa 71  Q
    ||||||||||||||||||||||||||||||    
T  53924421 cttaggcctaacttctattccttcaagaaa 53924392  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 53924315 - 53924271
Alignment:
Q  151 aactctcccatctcaatctccaaccacccatcacttctcacacta 195  Q
    ||||| |||||||||||||||||||||||||| || |||| ||||    
T  53924315 aactcccccatctcaatctccaaccacccatcgctcctcaaacta 53924271  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 33138681 - 33138612
Alignment:
Q  141 tgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatcct 210  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||  | |||||||||    
T  33138681 tgaattgaagaattttcccatctcaatctccaaccacccatcacttctcacagtaggacgctgcaatcct 33138612  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 18558792 - 18558756
Alignment:
Q  161 tctcaatctccaaccacccatcacttctcacactagg 197  Q
    |||||||||||||||||||||||| ||||||||||||    
T  18558792 tctcaatctccaaccacccatcacgtctcacactagg 18558756  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 38631955 - 38632045
Alignment:
Q  106 ataacactcatttggacttcttcatccactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactag 196  Q
    ||||||||||| |||| |||||||||    | | ||||| |||||||||||||||| | ||||||||||||||||||  |||| |||||||    
T  38631955 ataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatatgaatctccaaccacccatcgtttcttacactag 38632045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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