View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_83 (Length: 251)
Name: NF6682_2D_low_83
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_83 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 105 - 234
Target Start/End: Complemental strand, 8410513 - 8410384
Alignment:
| Q |
105 |
tgatcaatttatacttgttcaatcttagtcactagtttgtaaggttcgcttatttgtaaatgtttaaattttgctaaattagaaaaatgtctttttggcc |
204 |
Q |
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| T |
8410513 |
tgatcaatttatacttgttcaatcttagtcactagtttgtaaggtttgcttatttgtaaatgtttaaattttgctaaattagaaaaatgtctttttggcc |
8410414 |
T |
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| Q |
205 |
tgctgtggctaacaattggcctttgcattc |
234 |
Q |
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| T |
8410413 |
tgctgtggctaacaattggcctttgcattc |
8410384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 8411442 - 8411357
Alignment:
| Q |
74 |
ataaagctttgtaaggttcacttattcataatgatcaatttatacttgttcaatcttagtcactagtttgtaaggttcgcttattt |
159 |
Q |
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| T |
8411442 |
ataaagctttgtaaggttcacttatttataatgatcaatttatacttgtttaatcttagtcactagtttttaaggttcacttattt |
8411357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 8361230 - 8361154
Alignment:
| Q |
158 |
ttgtaaatgtttaaattttgctaaattagaaaaatgtctttttggcctgctgtggctaacaattggcctttgcattc |
234 |
Q |
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| T |
8361230 |
ttgtaaatgtttaaattttgctaaattagaaaaatgtcgttttggcctgctgtggctaacaattagcctttgcattc |
8361154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 8361393 - 8361283
Alignment:
| Q |
50 |
tcctacctaagtaagat-cacacttataaagctttgtaaggttcacttattcataat-gatcaatttatacttgttcaatcttagtcactagtttgtaag |
147 |
Q |
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| T |
8361393 |
tcctatcttagtaagattcacacttataa-gctttgtaaggttcaattatttataattgatcaatttatacttgttcaatcttagtcactagtatttaag |
8361295 |
T |
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| Q |
148 |
gttcgcttattt |
159 |
Q |
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| T |
8361294 |
gttcgcttattt |
8361283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 8443248 - 8443179
Alignment:
| Q |
164 |
atgtttaaattttgctaaattagaaaaatgtctttttggcctgctgtggctaacaattggcctttgcatt |
233 |
Q |
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| T |
8443248 |
atgtttaaattttcctaaattagaaaaatgttttttttccctgctgtgtctaacaattggcctttgcatt |
8443179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 8411332 - 8411297
Alignment:
| Q |
194 |
tctttttggcctgctgtggctaacaattggcctttg |
229 |
Q |
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| T |
8411332 |
tctttttggcctgctgtggctaacaattggcctttg |
8411297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 68599 - 68671
Alignment:
| Q |
162 |
aaatgtttaaattttgctaaattagaaaaatgtc-tttttggcctgctgtggctaacaattggcctttgcatt |
233 |
Q |
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| T |
68599 |
aaatgcttaaattttcctaaattagaaaaatgtctttttttgccgactgtgtctaacaattggcctttgcatt |
68671 |
T |
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