View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_84 (Length: 248)
Name: NF6682_2D_low_84
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_84 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 26212401 - 26212181
Alignment:
| Q |
14 |
ttaaaatgtattttttgttgatccatttagtctataaaataaaattactaacaaaagagatacttgaaaatttgtttgtaattttagtacattcagagac |
113 |
Q |
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| T |
26212401 |
ttaaaatgtattttttgttgatccatttagtctataaaataaaattactaacaaaaaagatacttgagaatgtgtttgtaattttaatacattgagagac |
26212302 |
T |
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| Q |
114 |
tagtgtgacaat---gtctcacacaccgaaggaccaaactagttgtttatccaaaaacaaaagcattaattgatgaaggttgaaactaccattggcaaaa |
210 |
Q |
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| T |
26212301 |
tagtgtgacaatattgtctcacgcaccgaaggaccaaactaattatttatccaaaaacaaaagcattaattgatgaaggttgaaactaccattggcaaaa |
26212202 |
T |
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| Q |
211 |
acaagcattttgcattgattt |
231 |
Q |
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| T |
26212201 |
acaagcattttgcattgattt |
26212181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 31104604 - 31104545
Alignment:
| Q |
52 |
ataaaattactaacaaaagagatacttgaaaatttgtttgtaattttagtacattcagaga |
112 |
Q |
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||||||||||| |||||||||| | |||| ||| ||||||||||||| |||||||||||| |
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| T |
31104604 |
ataaaattactgacaaaagagaca-ttgagaatgtgtttgtaattttgatacattcagaga |
31104545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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