View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_88 (Length: 247)
Name: NF6682_2D_low_88
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_88 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 4862384 - 4862611
Alignment:
| Q |
11 |
tgaaatggtgcttaccttgcttgtttgagacccgtaatcatcactgctactcgtgaaacgaacatcacttccatcttcacttgtaaactgtgacacttgt |
110 |
Q |
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| T |
4862384 |
tgaaatggtgcttaccttgcttgtttgagacccgtaatcatcactgctactcgtgaaacaaacatcacttccatcttcacttgtaaactgtgacacttgt |
4862483 |
T |
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| Q |
111 |
tgtctttcctcacttttttccttttcatgagtccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacat |
210 |
Q |
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| T |
4862484 |
tgtctttcctcacttttttccttttcatgagtccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacat |
4862583 |
T |
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| Q |
211 |
cactcattgacattcgttgatgtccatc |
238 |
Q |
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| T |
4862584 |
cactcattgacattcgttgatttccatc |
4862611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 4698811 - 4698584
Alignment:
| Q |
11 |
tgaaatggtgcttaccttgcttgtttgagacccgtaatcatcactgctactcgtgaaacgaacatcacttccatcttcacttgtaaactgtgacacttgt |
110 |
Q |
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| T |
4698811 |
tgaattggtgcttactttgcttgtttgagtctcataatcatcactgctactagtgaaacgaatatcacttccatcttcacttataaactgcgacacttgt |
4698712 |
T |
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| Q |
111 |
tgtctttcctcacttttttccttttcatgagtccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacat |
210 |
Q |
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| T |
4698711 |
tgtcttttctcacttttttccttttcattattccaaccaaacttagtatcctcctcacttatctccaactgcaatgcaaactctaaagctccaacaacat |
4698612 |
T |
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| Q |
211 |
cactcattgacattcgttgatgtccatc |
238 |
Q |
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| T |
4698611 |
cactcatcgacatccgttgatttccatc |
4698584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 4785428 - 4785229
Alignment:
| Q |
36 |
tgagacccgtaatcatcactgctactcgtgaaacgaacatcacttccatcttcacttgtaaactgtgacacttgttgtctttcctcacttttttcctttt |
135 |
Q |
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| T |
4785428 |
tgagacccatagtcatcactactacttgtgaaacacatatcactcccatcatca---gtaaaatgtgacaattctatcctttgctcactcttttcctttt |
4785332 |
T |
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| Q |
136 |
catgagt-ccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatgtc |
234 |
Q |
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| T |
4785331 |
ccttggtaccaacaag-cttactatcctcctcactcatctctaactgcaatgcaaactctaatgtcgcaaccacatcactcatcgacattcgttgatttc |
4785233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 4817857 - 4817658
Alignment:
| Q |
36 |
tgagacccgtaatcatcactgctactcgtgaaacgaacatcacttccatcttcacttgtaaactgtgacacttgttgtctttcctcacttttttcctttt |
135 |
Q |
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|||||||| || |||||||| ||||| ||||||| | |||||| ||||| ||| ||||| ||||||| || | |||| |||||| |||||||||| |
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| T |
4817857 |
tgagacccatagtcatcactactacttgtgaaacacatatcactcccatcatca---gtaaaatgtgacaattctatcctttgctcactcttttcctttt |
4817761 |
T |
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| Q |
136 |
catgagt-ccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatgtc |
234 |
Q |
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| T |
4817760 |
ccttggtaccaacaag-cttactatcctcctcactcatctctaactgcaatgcaaactctaatgtcgcaaccacatcactcatcgacattcgttgatttc |
4817662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 4713512 - 4713460
Alignment:
| Q |
186 |
gcaaactctaaagctccaacaacatcactcattgacattcgttgatgtccatc |
238 |
Q |
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|||| |||||||| ||||| ||||||||||| ||||||||||||| |||||| |
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| T |
4713512 |
gcaagctctaaagtcccaaccacatcactcatagacattcgttgatttccatc |
4713460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 4854882 - 4854830
Alignment:
| Q |
186 |
gcaaactctaaagctccaacaacatcactcattgacattcgttgatgtccatc |
238 |
Q |
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| T |
4854882 |
gcaagctctaaagttccaaccacatcactcatagacatccgttgatttccatc |
4854830 |
T |
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