View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6682_2D_low_9 (Length: 734)

Name: NF6682_2D_low_9
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6682_2D_low_9
NF6682_2D_low_9
[»] chr8 (1 HSPs)
chr8 (1-717)||(23560668-23561378)
[»] chr4 (12 HSPs)
chr4 (211-332)||(31696735-31696856)
chr4 (211-332)||(31707827-31707948)
chr4 (452-490)||(31717079-31717117)
chr4 (452-490)||(31722953-31722991)
chr4 (452-490)||(31724306-31724344)
chr4 (171-272)||(31701982-31702083)
chr4 (232-332)||(31732633-31732733)
chr4 (232-332)||(31745534-31745634)
chr4 (452-490)||(31701773-31701811)
chr4 (443-484)||(31707697-31707738)
chr4 (443-500)||(31732469-31732526)
chr4 (443-500)||(31745370-31745427)
[»] chr3 (5 HSPs)
chr3 (445-487)||(1107021-1107063)
chr3 (212-296)||(5445451-5445535)
chr3 (212-296)||(5454034-5454118)
chr3 (208-254)||(1050126-1050172)
chr3 (212-294)||(5502076-5502158)
[»] chr6 (1 HSPs)
chr6 (212-296)||(25810277-25810361)
[»] chr5 (1 HSPs)
chr5 (445-511)||(28419333-28419399)
[»] scaffold0090 (1 HSPs)
scaffold0090 (265-334)||(8692-8761)


Alignment Details
Target: chr8 (Bit Score: 650; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 1 - 717
Target Start/End: Original strand, 23560668 - 23561378
Alignment:
Q  1 tttggtatcatctgtttcataagtagatttattgacctatttggatttagatttcaaattttattttcataacctccaaagtgatattgcaatcattaac 100  Q
    |||||||||||||||||||||||||      ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23560668 tttggtatcatctgtttcataagta------ttgacctattttgatttagatttcaaattttattttcataacctccaaagtgatattgcaatcattaac 23560761  T
Q  101 tagtgtaccaaggtataagaatgtttgaaatattcataccaaaaatcaaccaatttaagctattgtttggcatgtactcataaactagcattcgatgttc 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23560762 tagtctaccaaggtataagaatgtttgaaatattcataccaaaaatcaaccaatttaagctattgtttggcatgtactcataaactagcattcgatgttc 23560861  T
Q  201 ttcctcgatgcaacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttccttgtccagag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  23560862 ttcctcgatgcaacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttcattctttaactcgttaattccttggccagag 23560961  T
Q  301 tcacttgaaagcctcttcacagcaatttcttgtcgacttgccaatcttccctacataataacatataaaagtaaattaagacactttttaatcacattga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23560962 tcacttgaaagcctcttcacagcaatttcttgtcgacttgccaatcttccctacataataacatataaaagtaaattaagacactttttaatcacattga 23561061  T
Q  401 tagtatagttaattaatcctttttcctacataatatatacttaattaccttatatacaggtccaaaaccaccttctccaatcttgttctttattgagaag 500  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||    
T  23561062 tagtatagttaattaatcctttctcctacataatatatacttaattaccttgtatacaggtccaaaaccaccttctccaatcttgttcttgatcgagaag 23561161  T
Q  501 ttatcagtggcagtgactaaggttgaatatgtaagcagtgggagatcgagatcatcctcatcttcactacctctgccaccttctagttcaatattttctg 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23561162 ttatcagtggcagtgactaaggttgaatatgtaagcagtgggagatcaagatcatcctcatcttcactacctctgccaccttctagttcaatattttctg 23561261  T
Q  601 aatcctctgataaaatggaacaatggcttcagtttagtttaaggaataaggtaagaggtatatgataaatcattaactactgacatgctgccgaaaacag 700  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23561262 aatcctctgataaaatggaacaatggcttcagtttagtttaaggcataaggtaagaggtatgtgataaatcattaactactgacatgctgccgaaaacag 23561361  T
Q  701 accatacatgattatta 717  Q
    |||||||||||||||||    
T  23561362 accatacatgattatta 23561378  T

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Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 211 - 332
Target Start/End: Complemental strand, 31696856 - 31696735
Alignment:
Q  211 caacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttccttgtccagagtcacttgaaa 310  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||| || |||||||||||  |    |||||| || ||||||||||||||| ||||||||    
T  31696856 caacagccaagaagcttaaccagatttcggtgttgaagttttgcaatcagttttacttctgttaggaactcggtaattccttgtccagagttacttgaaa 31696757  T
Q  311 gcctcttcacagcaatttcttg 332  Q
    | ||||| ||||||||||||||    
T  31696756 gtctcttaacagcaatttcttg 31696735  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 211 - 332
Target Start/End: Complemental strand, 31707948 - 31707827
Alignment:
Q  211 caacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttccttgtccagagtcacttgaaa 310  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||| || |||||||||||  |    |||||  || |||||||||||||||   ||||||    
T  31707948 caacagccaagaagcttaaccagatttcggtgttgaagttttgcaatcagttttacttctgttaagaactcagtaattccttgtccagagtttgttgaaa 31707849  T
Q  311 gcctcttcacagcaatttcttg 332  Q
    | ||||| ||||||||||||||    
T  31707848 gtctcttgacagcaatttcttg 31707827  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 490
Target Start/End: Complemental strand, 31717117 - 31717079
Alignment:
Q  452 atatacaggtccaaaaccaccttctccaatcttgttctt 490  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  31717117 atatacaggtccaaaaccaccttctccaattttgttctt 31717079  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 490
Target Start/End: Complemental strand, 31722991 - 31722953
Alignment:
Q  452 atatacaggtccaaaaccaccttctccaatcttgttctt 490  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  31722991 atatacaggtccaaaaccaccttctccaattttgttctt 31722953  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 490
Target Start/End: Complemental strand, 31724344 - 31724306
Alignment:
Q  452 atatacaggtccaaaaccaccttctccaatcttgttctt 490  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  31724344 atatacaggtccaaaaccaccttctccaattttgttctt 31724306  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 31702083 - 31701982
Alignment:
Q  171 catgtactcataaactagcattcgatgttcttcctcgatgcaacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttca 270  Q
    |||||| |||||||||| ||||   | ||||  ||| ||||||||||||| ||| || |||||||||| ||| ||||  ||||| |||||||||||||||    
T  31702083 catgtattcataaactaacattttttcttctctctcaatgcaacagccaataagctttacaagatttcggtgctgaacatttgcaataagttttacttca 31701984  T
Q  271 tt 272  Q
    ||    
T  31701983 tt 31701982  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 332
Target Start/End: Complemental strand, 31732733 - 31732633
Alignment:
Q  232 agatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttccttgtccagagtcacttgaaagcctcttcacagcaatttctt 331  Q
    ||||||| ||||||||||||||| || || |||||||||||  | |||||| |  |||||||||| |||   |||||||| ||||| || ||||||||||    
T  31732733 agatttcggtgttgaagttttgcaattagctttacttcatttatgaactcggtcattccttgtcccgagatgcttgaaagtctcttaactgcaatttctt 31732634  T
Q  332 g 332  Q
    |    
T  31732633 g 31732633  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 332
Target Start/End: Complemental strand, 31745634 - 31745534
Alignment:
Q  232 agatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttccttgtccagagtcacttgaaagcctcttcacagcaatttctt 331  Q
    ||||||| ||||||||||||||| || || |||||||||||  | |||||| |  |||||||||| |||   |||||||| ||||| || ||||||||||    
T  31745634 agatttcggtgttgaagttttgcaattagctttacttcatttatgaactcggtcattccttgtcccgagatgcttgaaagtctcttaactgcaatttctt 31745535  T
Q  332 g 332  Q
    |    
T  31745534 g 31745534  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 452 - 490
Target Start/End: Complemental strand, 31701811 - 31701773
Alignment:
Q  452 atatacaggtccaaaaccaccttctccaatcttgttctt 490  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  31701811 atatacagttccaaaaccaccttctccaattttgttctt 31701773  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 484
Target Start/End: Complemental strand, 31707738 - 31707697
Alignment:
Q  443 aattaccttatatacaggtccaaaaccaccttctccaatctt 484  Q
    ||||||||| ||||||| |||||||||||||| |||||||||    
T  31707738 aattaccttgtatacagatccaaaaccaccttgtccaatctt 31707697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 500
Target Start/End: Complemental strand, 31732526 - 31732469
Alignment:
Q  443 aattaccttatatacaggtccaaaaccaccttctccaatcttgttctttattgagaag 500  Q
    |||||||||||| |||| ||||||||||||||| ||||| || || ||| ||||||||    
T  31732526 aattaccttatacacagttccaaaaccaccttcgccaattttattgtttcttgagaag 31732469  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 500
Target Start/End: Complemental strand, 31745427 - 31745370
Alignment:
Q  443 aattaccttatatacaggtccaaaaccaccttctccaatcttgttctttattgagaag 500  Q
    |||||||||||| |||| ||||||||||||||| ||||| || || ||| ||||||||    
T  31745427 aattaccttatacacagttccaaaaccaccttcgccaattttattgtttcttgagaag 31745370  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 445 - 487
Target Start/End: Complemental strand, 1107063 - 1107021
Alignment:
Q  445 ttaccttatatacaggtccaaaaccaccttctccaatcttgtt 487  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  1107063 ttaccttatataccggtccaaaaccaccttctccaagcttgtt 1107021  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 212 - 296
Target Start/End: Original strand, 5445451 - 5445535
Alignment:
Q  212 aacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttccttgtcc 296  Q
    |||| ||||||||||| |||||||| | |||||||||| |||| || |  ||||||||||| || ||||| | ||||||||||||    
T  5445451 aacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcc 5445535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 212 - 296
Target Start/End: Original strand, 5454034 - 5454118
Alignment:
Q  212 aacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttccttgtcc 296  Q
    |||| ||||||||||| |||||||| | |||||||||| |||| || |  ||||||||||| || ||||| | ||||||||||||    
T  5454034 aacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcc 5454118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 1050172 - 1050126
Alignment:
Q  208 atgcaacagccaagaagtttaacaagatttctgtgttgaagttttgc 254  Q
    |||||||| |||||||  ||||||||||||| |||||||||||||||    
T  1050172 atgcaacaaccaagaaccttaacaagatttcggtgttgaagttttgc 1050126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 5502076 - 5502158
Alignment:
Q  212 aacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttccttgt 294  Q
    |||| |||||||||||||||||||| | |||||||||| |||| || |  ||||||||||| || ||||| |  |||||||||    
T  5502076 aacaaccaagaagtttaacaagattacggtgttgaagtgttgccatcaagtttacttcatttttgaactcctcggttccttgt 5502158  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 25810361 - 25810277
Alignment:
Q  212 aacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttccttgtcc 296  Q
    |||| ||||||||||| |||||||| | |||||||||| |||| || |  ||||||||||| || ||||| | ||||||||||||    
T  25810361 aacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcc 25810277  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 445 - 511
Target Start/End: Complemental strand, 28419399 - 28419333
Alignment:
Q  445 ttaccttatatacaggtccaaaaccaccttctccaatcttgttctttattgagaagttatcagtggc 511  Q
    ||||||| ||||| |||||||| |||||||| |||| ||| || ||  |||||||||||||||||||    
T  28419399 ttaccttgtatacgggtccaaatccaccttcaccaagcttattgttggttgagaagttatcagtggc 28419333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 8692 - 8761
Alignment:
Q  265 acttcattctttaactcgttagttccttgtccagagtcacttgaaagcctcttcacagcaatttcttgtc 334  Q
    ||||||||||| ||||| |||  ||||||||||||    ||||||||||| || ||||||||||||||||    
T  8692 acttcattcttaaactctttaagtccttgtccagaactccttgaaagccttttgacagcaatttcttgtc 8761  T

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