View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_92 (Length: 235)
Name: NF6682_2D_low_92
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_92 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 36968722 - 36968566
Alignment:
| Q |
13 |
taatgaaatgacaattcaattggtcatcgtcctgagttgtccagttgctctttatcatgttattttgagtgctctaatgttttgataaacgattaggtat |
112 |
Q |
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| T |
36968722 |
taatgaaatgacaattcaactggtcatcgtcctgagttgtccaattactctttatcatgttattttgagtgctctaatgttttgataagcgattagatat |
36968623 |
T |
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| Q |
113 |
tgaaattacatgatgttccatataatttcttgttaaaggaatgtttagtttcttttg |
169 |
Q |
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| T |
36968622 |
tgaaattacatgatgttccatataatttcttgttaaaggaatgtttagtttcttttg |
36968566 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 36969675 - 36969585
Alignment:
| Q |
73 |
tattttgagtgctctaatgttttgataaacgattaggtattgaaattacatgatgttccatataatttcttgttaaaggaatgtttagttt |
163 |
Q |
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| T |
36969675 |
tattttgggtgatctaatgttttgataaaagattaggtgttggaatgacatgatattgcatataatttcttgttaaatgaatgtttagttt |
36969585 |
T |
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