View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_high_2 (Length: 560)
Name: NF6682_high_2
Description: NF6682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 13 - 544
Target Start/End: Original strand, 33262841 - 33263373
Alignment:
| Q |
13 |
aatatttttaatttaaaagtgattagaaaaatactaacattattacaccggtattagttgaataagattcaaat---tctttaagtttttggattcgagt |
109 |
Q |
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| T |
33262841 |
aatatttttaatttaaaagtgattagaaaaatactaacattattacaccggtattaattgaataagattcaaatatttctttaagtttttcgattcgagt |
33262940 |
T |
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| Q |
110 |
cttatccatagataaaatatactagaagttgacataaagatcttagttgttcag--tctacgtagagattagttatctatgaatagaaaattcacatatg |
207 |
Q |
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| T |
33262941 |
cttatccatagataaaatatactagaagttgagataaagatcttagttgttcagattctaagtagagattagttat----gaatagaaaattcacatatg |
33263036 |
T |
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| Q |
208 |
taaacnnnnnnncatttactgaccttgtcatcagtgtagatcttgaacctaatactttggtcttgttggagtttgttgttcctttgttgacttccaaaga |
307 |
Q |
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| T |
33263037 |
taaacaaaaaaacatttactgaccttgtcatcagtgtagatcttgaacctaatactttggtcttgttggagtttgttgttcctttgttgacttccaaaga |
33263136 |
T |
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| Q |
308 |
acaagacacaaattgtggcagcagcaacaccaaaagaacatatagctccaactcctgtcaagctccacttccacaagttaaaaccaccattcatgtcctc |
407 |
Q |
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| T |
33263137 |
acaagacacaaattgtggcagcagcaacaccaaaagaacatatagctccaactcctgtcaagctccacttccacaagttaaaaccaccattcatgtcctc |
33263236 |
T |
|
| Q |
408 |
tccttctttctcatcatagtacatgtcaaccttttcattctccatgttcttcattctaggagatgtcatcatctccatgtctgcatcaagtggagaaaat |
507 |
Q |
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| T |
33263237 |
tccttctttctcatcatagtacatgtcaaccttttcattctccatgttcttcattctaggagatgtcatcatctccatgtctgcatcaagtggagaaaat |
33263336 |
T |
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| Q |
508 |
aatcctctaccactactagattttggtgactccaatt |
544 |
Q |
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| T |
33263337 |
aatcctctaccactactagattttggtgactccaatt |
33263373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 10062440 - 10062383
Alignment:
| Q |
286 |
ttcctttgttgacttccaaagaacaagacacaaattgtggcagcagcaacaccaaaag |
343 |
Q |
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| T |
10062440 |
ttcctttgttggcttccaaagaacaaaacacaaatagaagcagcaacaacaccaaaag |
10062383 |
T |
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