View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_low_1 (Length: 657)
Name: NF6682_low_1
Description: NF6682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_low_1 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 5 - 644
Target Start/End: Original strand, 41963371 - 41964010
Alignment:
| Q |
5 |
tgtcgaagaatattcaaactgggtttgttgcttgtcctagggagtttagttacagagaattgaaatcggctacaagagagtttcatccgagcaggattgt |
104 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963371 |
tgtcgaagaattttcaaactgggtttgttgcttgtcctagggagtttagttacagagaattgaaatcggctacaagagagtttcatccgagcaggattgt |
41963470 |
T |
|
| Q |
105 |
tggtcacggttcgtttggaactgtgtataaagcgttctttatatcgtctggaaccattgctgcagtgaaaagatcgaggcattcacatgaaggaaagacc |
204 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963471 |
tggtcacggttcatttggaactgtgtataaagcgttctttatatcgtctggaaccattgctgcagtgaaaagatcgaggcattcacatgaaggaaagacc |
41963570 |
T |
|
| Q |
205 |
gagtttctctctgaattgaacatcattgctggtttaaggcacaagactttggctcagctgttgggttgtggtgtttagaaaggtgaggtgcttcttgttt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||| ||||||||||| |||||||| ||| |
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| T |
41963571 |
gagtttctctctgaattgaacatcattgctggtttaaggcacaagaatttggctcagttgttgggttggtctgttgagaaaggtgagttgcttctttttt |
41963670 |
T |
|
| Q |
305 |
atgatttcatgcctaatggaagcttagacaagatgctttacaaagaacctgagagagggaaattgttgacttggtctattaggtataatattgttgttgg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963671 |
atgatttcatgcctaatggaagcttagacaagatgctttacaaagaacctgagagagggaaattgttgacttggtctattaggtataatattgttgttgg |
41963770 |
T |
|
| Q |
405 |
tttggcttctgtattggtttatcttcatcaggaatgtgagcaaagagtggttcatagagatattaaaactgggaatgttttgctggatgggaatttcaat |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41963771 |
tttggcttctgtattggtttatcttcatcaggaatgtgagcaaagagtggttcatagagatattaaaactgggaatgttttgctggatgggaatttcaat |
41963870 |
T |
|
| Q |
505 |
gctaggttaggtgattttggattggctaaactcatggatcatgataagagtcctgtttcaactttaactgctggaacaatgggataccttgcacctgaat |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963871 |
gctaggttaggtgattttggattggctaaactcatggatcatgataagagtcctgtttcaactttaactgctggaacaatgggataccttgcacctgaat |
41963970 |
T |
|
| Q |
605 |
atcttcaatatggtaaagctactgataagactgatgtttt |
644 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
41963971 |
atcttcaatatggtaaagctactgataagactgatgtttt |
41964010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 5 - 644
Target Start/End: Original strand, 1224827 - 1225445
Alignment:
| Q |
5 |
tgtcgaagaatattcaaactgggtttgttgcttgtcctagggagtttagttacagagaattgaaatcggctacaagagagtttcatccgagcaggattgt |
104 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1224827 |
tgtcgaagaattttcaaactgggtttgttgcttgtcctagggagtttagttacagagaattgaaatcggctacaagagagtttcatccgagtaggattgt |
1224926 |
T |
|
| Q |
105 |
tggtcacggttcgtttggaactgtgtataaagcgttctttatatcgtctggaaccattgctgcagtgaaaagatcgaggcattcacatgaaggaaagacc |
204 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224927 |
tggtcacggttcgtttggaactttgtataaagcgttctttatatcgtctggaaccattgctgcagtgaaaagatcgaggcattcacatgaaggaaagacc |
1225026 |
T |
|
| Q |
205 |
gagtttctctctgaattgaacatcattgctggtttaaggcacaagactttggctcagctgttgggttgtggtgtttagaaaggtgaggtgcttcttgttt |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| ||||||||||| |||||||||||| |
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| T |
1225027 |
gagtttctctctgaattgaacatcattgctggtttaaggcacaagaatttggctcagttgttgggttggtgtgttgagaaaggtgagttgcttcttgttt |
1225126 |
T |
|
| Q |
305 |
atgatttcatgcctaatggaagcttagacaagatgctttacaaagaacctgagagagggaaattgttgacttggtctattaggtataatattgttgttgg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1225127 |
atgatttcatgcctaatggaagcttagacaagatgctttacaaagaacctgagagagggaaattgttgacttggtctattaggtataatattgttgttgg |
1225226 |
T |
|
| Q |
405 |
tttggcttctgtattggtttatcttcatcaggaatgtgagcaaagagtggttcatagagatattaaaactgggaatgttttgctggatgggaatttcaat |
504 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1225227 |
tttggcttctgtattggttt---ttcatcaggaatgtgagcaaagagtggttcatagagatattaaaac------------------tgggaatttcaat |
1225305 |
T |
|
| Q |
505 |
gctaggttaggtgattttggattggctaaactcatggatcatgataagagtcctgtttcaactttaactgctggaacaatgggataccttgcacctgaat |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1225306 |
gctaggttaggtgattttggattggctaaactcatggatcatgataagagtcctgtttcaactttaactgctggaacaatgggataccttgcacctgaat |
1225405 |
T |
|
| Q |
605 |
atcttcaatatggtaaagctactgataagactgatgtttt |
644 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
1225406 |
atcttcaatatggtaaagctactgataagactgatgtttt |
1225445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 394 - 645
Target Start/End: Original strand, 23915042 - 23915293
Alignment:
| Q |
394 |
attgttgttggtttggcttctgtattggtttatcttcatcaggaatgtgagcaaagagtggttcatagagatattaaaactgggaatgttttgctggatg |
493 |
Q |
| |
|
|||||||| || ||||||||||| || | |||| | ||||| |||||||||||||||||| |||||||||||||||| || | ||| | ||||| |||| |
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|
| T |
23915042 |
attgttgtagggttggcttctgttttagcttatttgcatcaagaatgtgagcaaagagtgattcatagagatattaagacggcaaatatattgctagatg |
23915141 |
T |
|
| Q |
494 |
ggaatttcaatgctaggttaggtgattttggattggctaaactcatggatcatgataagagtcctgtttcaactttaactgctggaacaatgggatacct |
593 |
Q |
| |
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| ||||| ||| | ||||||||||||||||||||||| ||||| ||||||||||||| |||||| ||||| || ||||| || ||||||||||||||||| |
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| T |
23915142 |
gaaatttgaatccaaggttaggtgattttggattggcaaaacttatggatcatgatatgagtccggtttcgacgttaaccgccggaacaatgggatacct |
23915241 |
T |
|
| Q |
594 |
tgcacctgaatatcttcaatatggtaaagctactgataagactgatgttttt |
645 |
Q |
| |
|
|| ||||| ||||| ||||| |||||||| || || || || ||||||||| |
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|
| T |
23915242 |
agctcctgagtatctacaatacggtaaagcaaccgacaaaaccgatgttttt |
23915293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 23914803 - 23914932
Alignment:
| Q |
161 |
ttgctgcagtgaaaagatcgaggcattcacatgaaggaaagaccgagtttctctctgaattgaacatcattgctggtttaaggcacaagactttggctca |
260 |
Q |
| |
|
||||||| || |||||||| || ||||||||||||||||| ||||||||| | || || || || || ||||||||||||||||||| ||||| ||| |
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| T |
23914803 |
ttgctgctgttaaaagatcaagacattcacatgaaggaaaaaccgagtttttatccgagttatcgattatagctggtttaaggcacaagaatttggttca |
23914902 |
T |
|
| Q |
261 |
gctgttgggttgtggtgtttagaaaggtga |
290 |
Q |
| |
|
|| || ||||| ||||| |||||||||| |
|
|
| T |
23914903 |
acttttaggttggtgtgttgagaaaggtga |
23914932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 37234 - 37271
Alignment:
| Q |
298 |
cttgtttatgatttcatgcctaatggaagcttagacaa |
335 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
37234 |
cttgtttatgagttcatgccaaatggaagcttagacaa |
37271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 22897561 - 22897509
Alignment:
| Q |
283 |
aaaggtgaggtgcttcttgtttatgatttcatgcctaatggaagcttagacaa |
335 |
Q |
| |
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||||||||| ||||||| || ||||||| ||||||||||||||| ||||||| |
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|
| T |
22897561 |
aaaggtgagttgcttctggtctatgattacatgcctaatggaagtctagacaa |
22897509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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