View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6685_2D_high_4 (Length: 505)
Name: NF6685_2D_high_4
Description: NF6685_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6685_2D_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 116 - 431
Target Start/End: Complemental strand, 15287151 - 15286835
Alignment:
| Q |
116 |
ttgtgtgtttattttctaaattgaatatcttttacgtgtaactgtaaaattagtcgtttaaatcaaatgatctgtatccgaaagtttcttgttattctta |
215 |
Q |
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| T |
15287151 |
ttgtgtgtttattttttaaattggatatcttttacgtgtaactgtaaaattagtcgtttaaatcaaatgaactgtatccgaaagtttcttgttattctta |
15287052 |
T |
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| Q |
216 |
tatttccatattttaa-ttcgaacttaagaactcatcttaatgcatttggatatcaaagttgtatcaattatacctaattttaagaatttgctctaatga |
314 |
Q |
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| T |
15287051 |
tatttccatattttaaatttgaacttaagaactcatctgaatgcatttggataccaaagttgtatgaattatacctaattttaagaatttgctctaatga |
15286952 |
T |
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| Q |
315 |
taaaagacctgacttaaatttgaaagttttaagtacaagactcgttgatagtcctgaaatcgtaaagtttcgagttcgagtctcacaaatagcttttgaa |
414 |
Q |
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| T |
15286951 |
taaaaggcctgccttaaatttgaaagttctaagttcaagactcgctaatagtcctgaaattgtaaaggtttgagttcgagtctcacaaataacttttgaa |
15286852 |
T |
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| Q |
415 |
actgaaagttttaagtt |
431 |
Q |
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| T |
15286851 |
tatgaaagttttaagtt |
15286835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 15287205 - 15287150
Alignment:
| Q |
22 |
caatgatctgatttctgggtttaaactttaaacttgtttatttgtaaagagatgttt |
78 |
Q |
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| T |
15287205 |
caatgatctgatttctgggtttaaactttaaacttgtttatttgt-aagagatgttt |
15287150 |
T |
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