View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6685_2D_low_11 (Length: 442)
Name: NF6685_2D_low_11
Description: NF6685_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6685_2D_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 46061008 - 46061431
Alignment:
| Q |
1 |
gttaatgagtctcatatgcgataattatgtgcagcagattttaacaacaaaccatgtggtttctaacattatttccttgttttacctcttgcgcccttcc |
100 |
Q |
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| T |
46061008 |
gttaatgagtctcatatgcgataattatgtgcagcagattttaaaaacaaaccatgtggtttctaacattatttccttgttttacctcttgcgcccttcc |
46061107 |
T |
|
| Q |
101 |
ctacatgtatcttagtcttaatcacataatttttgcttacttttctattcgtctttcttctctcaatgatcacatctaaatttatggatagaagtgttag |
200 |
Q |
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| T |
46061108 |
ctacatgtatcttagtcttaatcacatcatttttgcttacttgtctattcgtctttcttctctcaatgatcacatctaaatttatggatagaagtgttag |
46061207 |
T |
|
| Q |
201 |
taagagattactttttgtacatggaggattgtaattgtaggcggtcaataaaaatcgcaatcaaagtattggaggtaactacaataatcaccaaattaaa |
300 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46061208 |
taagatattactttttgtacatggaggattgtaattgtaggcggtcaataaaagtcgcaatcaaagtattggaggtaactacaataatcaccaaattaaa |
46061307 |
T |
|
| Q |
301 |
ctgctataatatgatttctcaactgaaagtctatcatatgctttaatttataaagtgatcgatacatgaacaaggnnnnnnncgtaggcaaaagactaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
46061308 |
ctgctataatatgatttctcaactgaaagtctatcatatgctttaatttataaagtgatcaatacatgaacaaggaaaaaaacgtaggcaaaagactaca |
46061407 |
T |
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| Q |
401 |
tattttagagggcatggtcataag |
424 |
Q |
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|||||||||||||||||||||||| |
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| T |
46061408 |
tattttagagggcatggtcataag |
46061431 |
T |
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