View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6685_2D_low_2 (Length: 1022)

Name: NF6685_2D_low_2
Description: NF6685_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6685_2D_low_2
NF6685_2D_low_2
[»] chr1 (6 HSPs)
chr1 (438-1003)||(15593742-15594305)
chr1 (146-402)||(15593484-15593740)
chr1 (694-977)||(4679478-4679758)
chr1 (82-138)||(15593324-15593380)
chr1 (16-61)||(15593254-15593299)
chr1 (249-326)||(861889-861966)
[»] chr2 (2 HSPs)
chr2 (686-977)||(16662922-16663210)
chr2 (288-326)||(12940970-12941008)
[»] chr7 (10 HSPs)
chr7 (686-977)||(8586633-8586921)
chr7 (694-977)||(8615676-8615956)
chr7 (832-954)||(3146363-3146485)
chr7 (832-949)||(8645976-8646093)
chr7 (838-949)||(8640653-8640764)
chr7 (887-977)||(13334292-13334382)
chr7 (288-330)||(42720925-42720967)
chr7 (276-319)||(9483377-9483420)
chr7 (261-323)||(31924415-31924477)
chr7 (693-758)||(8658323-8658388)
[»] chr4 (3 HSPs)
chr4 (773-954)||(30774289-30774470)
chr4 (288-326)||(5096131-5096169)
chr4 (262-327)||(43093534-43093599)
[»] chr8 (4 HSPs)
chr8 (838-947)||(43743918-43744027)
chr8 (834-944)||(43445783-43445894)
chr8 (482-622)||(1767117-1767256)
chr8 (265-325)||(32145224-32145284)
[»] chr5 (1 HSPs)
chr5 (859-947)||(28219041-28219129)
[»] scaffold0248 (1 HSPs)
scaffold0248 (584-656)||(17757-17829)
[»] chr3 (2 HSPs)
chr3 (250-319)||(26656716-26656785)
chr3 (240-321)||(51733135-51733216)


Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 438 - 1003
Target Start/End: Original strand, 15593742 - 15594305
Alignment:
Q  438 tttgggagacaaggtgcaaagaaagctcaaataaaccnnnnnnngattattaactaaagcacaagagcctgatagggatcttaatttggaagcagtgttt 537  Q
    ||||| ||||||||| || ||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||| |||||||||||  ||||    
T  15593742 tttggaagacaaggtccatagaaagctcaaataaaccaaaaac-gattattaactaaagcacaagtgcctgatagggatcttgatttggaagcaaggttt 15593840  T
Q  538 -caaatatgctctactaaaactagaaaacaagacaaaacacacaaacaatttaagtaacatgttccatgcagatttcatcataaacatcaatacttttag 636  Q
     ||||||||||  |||||||||||||||||||||| || |||||||||||||||| |||||||| | |||| |||||||||||||||||||||||||| |    
T  15593841 tcaaatatgct--actaaaactagaaaacaagacagaaaacacaaacaatttaagcaacatgtttcgtgcaaatttcatcataaacatcaatactttttg 15593938  T
Q  637 ataatgataatcaacctaaatgtttgttatgctaaacaaagaagaatataactagtcagtcttgactacaaggttttcgaacatgctctcgagctccttc 736  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15593939 ataatgataatcaacctaaatgtttgttgtgctgaacaaagaagagtaaaactagccagtcttgactacaaggttttcgaacatgctctcgagctccttc 15594038  T
Q  737 agattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctt 836  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  15594039 aaattaccctcaagaacatctacttcattatgctggttattcttcttatcaagcaaatttgtagccactgtaattgcaccattgatctttgtaacttctt 15594138  T
Q  837 tagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaa 936  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594139 tagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaa 15594238  T
Q  937 tttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaac 1003  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  15594239 tttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaatttcatatgctgacaac 15594305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 166; E-Value: 3e-88
Query Start/End: Original strand, 146 - 402
Target Start/End: Original strand, 15593484 - 15593740
Alignment:
Q  146 tgctagtatattgggatttacaggctttgtagttgcttgaattggaaacttatagtctgccgcattgataggaaagttgattaatcaagacctatgtagc 245  Q
    ||||||||  |||| ||||||||||||||||||| |||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  15593484 tgctagtaagttggaatttacaggctttgtagttacttgaattggaa-cttatagtctcccacattgataggaaagttgatgaatcaagacctatgtagc 15593582  T
Q  246 actgacacgacacaaacacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaatgtcatgtaggtgttcaagttca 345  Q
    ||||||||||||||||| |||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| |  |||| |||||    
T  15593583 actgacacgacacaaacgcatgtgactatgttcgattaatctattttttcaaattattagtggtgtcaatgtgtcaatgtcatgtaagcattcacgttca 15593682  T
Q  346 agctttatagagcaaaaccagtcctgttacat-gtactctattcaaaagttcatcatg 402  Q
    ||||||||||| ||||||||||||| |||||| ||||| |||||||||||||||||||    
T  15593683 agctttatagatcaaaaccagtcctattacatagtactgtattcaaaagttcatcatg 15593740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 694 - 977
Target Start/End: Complemental strand, 4679758 - 4679478
Alignment:
Q  694 agtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaa 793  Q
    |||||||||| |||| ||||| ||||||||||| | ||||||||||| | ||||||||||||||| ||| ||   ||| |  || ||||||||||||||     
T  4679758 agtcttgacttcaagcttttccaacatgctctccaactccttcagatgatcctcaagaacatctatttcttt---ctgttcgttattcttatcaagcaag 4679662  T
Q  794 tttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa 893  Q
    || |  ||||||||||||||| | || ||||||  |  ||| | | ||||||| ||||| || |||||||| ||||| | ||||||  | |  |||||||    
T  4679661 ttggtggccactgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaagcattcttgatattgtaaa 4679562  T
Q  894 cacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatca 977  Q
    ||||    || |||||| |||||||||  ||||||||||  ||||||| ||||||  | ||||||| ||| ||||||| |||||    
T  4679561 cacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaatca 4679478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 15593324 - 15593380
Alignment:
Q  82 ccctaatagaggaaaccaggatgagtgatggcaagtgacaacacttcattcttgctc 138  Q
    |||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  15593324 ccctgatagaggaaaccacggtgagtgattgcaagtgacaacacttcattcttgctc 15593380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 15593254 - 15593299
Alignment:
Q  16 atatgaagtggaatggaactgatgaggatggtgtggtggcttgttc 61  Q
    |||||||||||||||||||| | |||||||||||||||||||||||    
T  15593254 atatgaagtggaatggaactaacgaggatggtgtggtggcttgttc 15593299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 326
Target Start/End: Original strand, 861889 - 861966
Alignment:
Q  249 gacacgacacaaacacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaatgtc 326  Q
    |||||||| | | |||| |||||||| ||||||| |   ||||||||||||||||| | ||||||||||||| |||||    
T  861889 gacacgaccccatcacacgtgactactttcaattttgtcattttttcaaattattactagtgtcaacgtgtctatgtc 861966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 686 - 977
Target Start/End: Complemental strand, 16663210 - 16662922
Alignment:
Q  686 aactagtcagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttat 785  Q
    |||||| ||||||||| ||||||||  || ||||| ||||| ||||||||||||| | ||||||||||||||||||||||   |||||   |||||| ||    
T  16663210 aactagacagtcttgattacaaggtgatccaacatactctcaagctccttcagatgatcctcaagaacatctacttcattcccctggt---tcttctcat 16663114  T
Q  786 caagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaa 885  Q
     |||||||| |  |||||| |||||||||  ||| |||||| ||  || ||   |||| || ||||||||||||| ||||||||| |||||||| |||||    
T  16663113 gaagcaaatctttagccaccgtaattgcatgattgatctttttatttttttggaaagaaagctttaatttgacattcttattctttagagcattcctcaa 16663014  T
Q  886 cttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatca 977  Q
     |||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||||||| | || ||||  |||||||||||||    
T  16663013 tttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatca 16662922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 12940970 - 12941008
Alignment:
Q  288 attttttcaaattattagtggtgtcaacgtgtcaatgtc 326  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  12940970 attttttcaaattattagttgtgtcaacgtgtcagtgtc 12941008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 4e-50; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 686 - 977
Target Start/End: Complemental strand, 8586921 - 8586633
Alignment:
Q  686 aactagtcagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttat 785  Q
    |||||| || ||||||| | ||||| ||| ||||||||||| ||||||||||||| | || ||||||||||||  ||||| | ||||| ||||||   ||    
T  8586921 aactagccactcttgaccaaaaggtcttccaacatgctctcaagctccttcagatgatccacaagaacatctatgtcattctcctggttattctt---at 8586825  T
Q  786 caagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaa 885  Q
    |||||||||||| ||||| ||||||||||  ||| |||||| |||||| || |||||||   |||| ||| | |||||||||||| |||||||| || ||    
T  8586824 caagcaaatttgtagccattgtaattgcatgattgatctttttaactttttgagaagagcactttagtttaatatccttattctttagagcattccttaa 8586725  T
Q  886 cttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatca 977  Q
    |||||||||||| |||||||||| |||||||||||  ||||||||||||||||||| ||| |||||  | ||  |||| |||||||||||||    
T  8586724 cttgtaaacacaatcatctaatgaattcattaccttagccttccttaggaatttctgatcctcagcgaggtacacctctgcttcttgaatca 8586633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 694 - 977
Target Start/End: Original strand, 8615676 - 8615956
Alignment:
Q  694 agtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaa 793  Q
    |||||| | |||||||| ||| ||||| || | |||||||||||||| | | || ||||| ||||||||| | ||||||| |||| |   ||||||||||    
T  8615676 agtcttaaatacaaggtcttccaacatacttttgagctccttcagatgatcttcgagaacttctacttcactctgctggttattcct---atcaagcaaa 8615772  T
Q  794 tttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa 893  Q
    |||| |||||| |||||||||   || || |||  ||||| || ||| || || |||||    |||||||||||||| |||||||| |||||||||||||    
T  8615773 tttgtagccacagtaattgcattgttgatattttcaactttttgagatgatagctttaaagcaacatccttattctttagagcattcctcaacttgtaaa 8615872  T
Q  894 cacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatca 977  Q
      |||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||| || || ||||| |||||||||||||    
T  8615873 tgcagtcatctaattcattcattaccttggccttccttaggaatttttcatcttcagcgcggtactcctctgcttcttgaatca 8615956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 832 - 954
Target Start/End: Original strand, 3146363 - 3146485
Alignment:
Q  832 ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttcctt 931  Q
    ||||| ||| ||||| ||||  || |||||||| ||||| | ||||||| ||| |||||||||||| | |||||||||||||||||| |  |||||||||    
T  3146363 ttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttcctt 3146462  T
Q  932 aggaatttctcatcttcagcacg 954  Q
    || ||||| ||||| ||| ||||    
T  3146463 agaaatttttcatcctcaacacg 3146485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 832 - 949
Target Start/End: Original strand, 8645976 - 8646093
Alignment:
Q  832 ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttcctt 931  Q
    ||||||||| ||||| |||||||| ||||||||  |||| ||||| ||  ||| ||| ||||  || |  |||||| |||||||||| |  |||||||||    
T  8645976 ttctttagatgagagatttaatttaacatccttcctctttagagctttcttcagcttataaatgcaatggtctaatccattcattacattggccttcctt 8646075  T
Q  932 aggaatttctcatcttca 949  Q
    ||||||||||||||||||    
T  8646076 aggaatttctcatcttca 8646093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 838 - 949
Target Start/End: Complemental strand, 8640764 - 8640653
Alignment:
Q  838 agaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaat 937  Q
    ||||||||| |||| ||| | |||||||||||| ||||||||  ||| ||||||||  || |  |||||| |||||||||  |  |||||||||||||||    
T  8640764 agaagagagctttagtttaatatccttattctttagagcattcttcatcttgtaaatgcaatagtctaatccattcattaaattggccttccttaggaat 8640665  T
Q  938 ttctcatcttca 949  Q
    |||||| |||||    
T  8640664 ttctcagcttca 8640653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 887 - 977
Target Start/End: Complemental strand, 13334382 - 13334292
Alignment:
Q  887 ttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatca 977  Q
    |||||||||||   ||||||||||||||||||||  |||||||||| |||||||| ||||||  || | |||||||  ||||||| |||||    
T  13334382 ttgtaaacacaagaatctaatgcattcattaccttggccttccttaagaatttcttatcttcgacatggtattccttagcttctttaatca 13334292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 42720925 - 42720967
Alignment:
Q  288 attttttcaaattattagtggtgtcaacgtgtcaatgtcatgt 330  Q
    |||||||||||||||||| ||||||||||||||| ||||||||    
T  42720925 attttttcaaattattagcggtgtcaacgtgtcagtgtcatgt 42720967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 319
Target Start/End: Complemental strand, 9483420 - 9483377
Alignment:
Q  276 ttcaattattctattttttcaaattattagtggtgtcaacgtgt 319  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||    
T  9483420 ttcaattattctattttctcaaattattattggtgtcaatgtgt 9483377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 31924477 - 31924415
Alignment:
Q  261 acacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaat 323  Q
    |||||||||| ||  ||||||| ||||||||| | |||||||||  |||||||||||||||||    
T  31924477 acacatgtgattatattcaattgttctattttcttaaattattatcggtgtcaacgtgtcaat 31924415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 693 - 758
Target Start/End: Original strand, 8658323 - 8658388
Alignment:
Q  693 cagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatcta 758  Q
    |||| ||||||||||| ||||| |||||| | || ||||||||||||| | |||||| ||||||||    
T  8658323 cagtattgactacaagcttttccaacatgatttccagctccttcagatgatcctcaacaacatcta 8658388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 773 - 954
Target Start/End: Original strand, 30774289 - 30774470
Alignment:
Q  773 tgattcttcttatcaagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttca 872  Q
    ||||| ||||||||||||||||||| |||||||| ||||||| || | |||||| | | || || ||| || || ||||| || || |||||| |||| |    
T  30774289 tgattattcttatcaagcaaatttgtagccactgcaattgcatcagtgatctttttgagtttttgagatgatagctttaaatttacgtccttaatcttta 30774388  T
Q  873 gagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacg 954  Q
    || |||| |||||||||||||  |||  |||||||||||||||||||   | ||||||||||||||||||||||||||||||    
T  30774389 gaccattcctcaacttgtaaatgcagcaatctaatgcattcattaccatagacttccttaggaatttctcatcttcagcacg 30774470  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 5096131 - 5096169
Alignment:
Q  288 attttttcaaattattagtggtgtcaacgtgtcaatgtc 326  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  5096131 attttttcaaattattagcggtgtcgacgtgtcaatgtc 5096169  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 43093534 - 43093599
Alignment:
Q  262 cacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaatgtca 327  Q
    ||||||||| ||| ||||||||| | |||||||||||||||||  |||||  |||||||| |||||    
T  43093534 cacatgtgattacattcaattatgccattttttcaaattattatgggtgttgacgtgtcagtgtca 43093599  T

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Target: chr8 (Bit Score: 54; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 838 - 947
Target Start/End: Original strand, 43743918 - 43744027
Alignment:
Q  838 agaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaat 937  Q
    |||||| || |||||||| |||||||||||||| | |||||| |||||||||||||| || |||||||||||||||||||| |  || ||||| || |||    
T  43743918 agaagaaagctttaatttaacatccttattctttacagcattcctcaacttgtaaacccattcatctaatgcattcattacattggctttcctaagaaat 43744017  T
Q  938 ttctcatctt 947  Q
    ||||||||||    
T  43744018 ttctcatctt 43744027  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 834 - 944
Target Start/End: Original strand, 43445783 - 43445894
Alignment:
Q  834 ctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa-cacagtcatctaatgcattcattacctccgccttcctta 932  Q
    ||||||| ||||| |||||||| | |||||||||||| | | |||| |||||| |||||| | || |||||||||||||||||||| |  |||||||| |    
T  43445783 ctttagacgagagctttaatttaatatccttattctttacaacattcctcaacctgtaaaacccattcatctaatgcattcattacattggccttcctaa 43445882  T
Q  933 ggaatttctcat 944  Q
    | ||||||||||    
T  43445883 gaaatttctcat 43445894  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 482 - 622
Target Start/End: Original strand, 1767117 - 1767256
Alignment:
Q  482 gattattaactaaagcacaagagcctgatagggatcttaatttggaagcagtgttt-caaatatgctctactaaaactagaaaacaagacaaaacacaca 580  Q
    |||||||||||  ||||||||| ||  | ||||||||| || | ||||||  |||| |||||||| |  |||||||||| ||||||||| | || ||| |    
T  1767117 gattattaacttgagcacaagaaccataaagggatcttgatcttgaagcaaggttttcaaatatgtt--actaaaactaaaaaacaagaaagaaaacaga 1767214  T
Q  581 aacaatttaagtaacatgttccatgcagatttcatcataaac 622  Q
    ||||||||||||| ||||||| ||||| | || |||||||||    
T  1767215 aacaatttaagtagcatgttcaatgcaaacttgatcataaac 1767256  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 265 - 325
Target Start/End: Complemental strand, 32145284 - 32145224
Alignment:
Q  265 atgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaatgt 325  Q
    |||||| |||||| |||||||| ||||| ||||||||||| |||||| || ||||||||||    
T  32145284 atgtgattacgtttaattattccattttctcaaattattactggtgttaaagtgtcaatgt 32145224  T

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Target: chr5 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 859 - 947
Target Start/End: Original strand, 28219041 - 28219129
Alignment:
Q  859 atccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatctt 947  Q
    |||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || |  ||||||||||| ||||| |||||||    
T  28219041 atccttattctttagagcattcctcaacttgtaaacgcagtcatctaatgcattcatgacattggccttccttagaaatttttcatctt 28219129  T

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Target: scaffold0248 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 584 - 656
Target Start/End: Complemental strand, 17829 - 17757
Alignment:
Q  584 aatttaagtaacatgttccatgcagatttcatcataaacatcaatacttttagataatgataatcaacctaaa 656  Q
    |||||||||||||||||| ||||| |||| |  |||||| |||||| | ||||||||||||||| ||||||||    
T  17829 aatttaagtaacatgttcaatgcaaattttacaataaacttcaataatgttagataatgataattaacctaaa 17757  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 26656716 - 26656785
Alignment:
Q  250 acacgacacaaacacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgt 319  Q
    |||| |||||||||||||||  ||| || ||||||| ||||||| ||||||| || || |||||||||||    
T  26656716 acacaacacaaacacatgtggttacattgaattattttatttttccaaattactactgttgtcaacgtgt 26656785  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 321
Target Start/End: Complemental strand, 51733216 - 51733135
Alignment:
Q  240 tgtagcactgacacgacacaaacacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtca 321  Q
    |||||||| ||||| ||||  |||||| ||   |||||||||||||||||||| |||| ||||||  ||||||||| |||||    
T  51733216 tgtagcaccgacacaacaccgacacatctggtaacgttcaattattctattttctcaagttattatcggtgtcaacctgtca 51733135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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