View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6685_2D_low_4 (Length: 785)
Name: NF6685_2D_low_4
Description: NF6685_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6685_2D_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 705; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 15 - 767
Target Start/End: Complemental strand, 2513260 - 2512508
Alignment:
| Q |
15 |
tggtgttcacagcacatattggaattttctctttcccgtaggaaatatcttcgacacatagaccttctcttgttttgagttttttagatttcttcacttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2513260 |
tggtgttcacagcacatattggaattttctctttcccgtaggaaatatcttcgacacatagaccttctcttgttttgaattttttagatttcttcacttc |
2513161 |
T |
|
| Q |
115 |
cttgaagacaagctctggttgtcccgggattcttcgcaagcgaaacttataaatcagcttcccatgtggtcctatatcctgccaacatgactcaactaca |
214 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2513160 |
cttgaaggaaagctctggttgtcccgggattcttcgcaagcaaaacttataaatcagcttcccatgtggtcctatatcctgccaacatgactcaactaca |
2513061 |
T |
|
| Q |
215 |
taaagtccatcataaacatatatcttgctttttccatccatcgattcagagcctcgtatcaccctaacagaattctttaccacgctactgttcttcagag |
314 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2513060 |
taaagtccatcataaacatatttcttgctttttccatccatcgattcagagccccgtatcaccctaacagaattctttaccacactactgttcttcagag |
2512961 |
T |
|
| Q |
315 |
caagattgccccgttcaagcttctgatcttctggctctttatcactgctcgtcacatttccacgctgtcctgtatatatcaaaacatctgaattatttaa |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2512960 |
caagattgccccgttcaagcttctgatcttctggctctttatcactgctcgtcacatttccacgctgccctgtatatatcaaaacatctgaattatttaa |
2512861 |
T |
|
| Q |
415 |
gtcgtcagcatagccccccgaatcaacaatactagttgcaagaatcttatctttttgcttcacataatctataccaccctgaatctcgcgatgaaggcca |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2512860 |
gtcgtcagcatagccccccgaatcaacaatactagttgcaagaatcttatctttttgcttcacataatctataccaccctgaatctcgcgatgaaggcca |
2512761 |
T |
|
| Q |
515 |
actatattaagctctattctgtattgaaattcatcaccaacttcaaccccaggaacagatcctaagatattctccccttcattaacgtagctcccttcct |
614 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2512760 |
attatattaagctctactctgtattgaaattcatcgccaacttcaaccccaggaacagatcctaagatattctccccttcattaacgtagttcccttcct |
2512661 |
T |
|
| Q |
615 |
ctttaagctttttcgcagcttgtaaatcaaacctctttatttctttctcatttgactttggttttgctttggcttcctgcaaaatctttctataaaaagc |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2512660 |
ctttaagctttttcgcagcttgtaaatcaaacctctttatttctttctcatttgactttggttttgctttggcttcctgcaaaatctttctataaaaagc |
2512561 |
T |
|
| Q |
715 |
ttggaacagtcgcaatgctttcctcactttattcctggccactgagtcattct |
767 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2512560 |
ttggaacagtcgcaatgctttcctcactttattcctggccactgagtcattct |
2512508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 15 - 767
Target Start/End: Complemental strand, 2497091 - 2496339
Alignment:
| Q |
15 |
tggtgttcacagcacatattggaattttctctttcccgtaggaaatatcttcgacacatagaccttctcttgttttgagttttttagatttcttcacttc |
114 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2497091 |
tggtgttcacagcacatataggaattt-ctctttcccgtaggaaatatcttcgacacatagaccttctcttgttttggactttttagatttcttcacttc |
2496993 |
T |
|
| Q |
115 |
cttgaagacaagctctggttgtcccgggattcttcgcaagcgaaacttataaatcagcttcccatgtggtcctatatcctgccaacatgactcaactaca |
214 |
Q |
| |
|
||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||| |||| |||||||||||||||||||||||||||||| |
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|
| T |
2496992 |
cttcaaggcaagctctggttgacccgggattcttcgcaagctaaacttataaaccatcttcccacgtggccctatatcctgccaacatgactcaactaca |
2496893 |
T |
|
| Q |
215 |
taaagtccatcataaacatatatcttgctttttccatccatcgattcagagcctcgtatcaccctaacagaattctttaccacgctactgttcttcagag |
314 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| || ||||| |||||| |||| |||||||| ||||||||||||||| || | |||||||||||| || |
|
|
| T |
2496892 |
taaagtccatcgtaaacatatatctttcttttaccgtccattgattcatagccccgtatcactctaacagaattcttttcctcattactgttcttcaaag |
2496793 |
T |
|
| Q |
315 |
caagattgccccgttcaagcttctgatcttctggctctttatcactgctcgtcacatttccacgctgtcctgtatatatcaaaacatctgaattatttaa |
414 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
2496792 |
caagatttccccgttcaagcttctgatcttctggctctttatcactgctcgtcacgtttcctccctgtcctgtatatatcaaaagatctgaattatctaa |
2496693 |
T |
|
| Q |
415 |
gtcgtcagcatagccccccgaatcaacaatactagttgcaagaatcttatctttttgcttcacataatctataccaccctgaatctcgcgatgaaggcca |
514 |
Q |
| |
|
||| ||||||||||| |||||| ||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2496692 |
gtcatcagcatagccacccgaagcaacaatactagttgcaaggatcttgtctttctgcctcacataatctataccaccctgaatctggcgatgaaggcca |
2496593 |
T |
|
| Q |
515 |
actatattaagctctattctgtattgaaattcatcaccaacttcaaccccaggaacagatcctaagatattctccccttcattaacgtagctcccttcct |
614 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
2496592 |
attatattaagctctattctgaattgaaattcatcaccaacttcaaccccaggaacagatcccaagatattctccccttcgttaacatggctcccttcct |
2496493 |
T |
|
| Q |
615 |
ctttaagctttttcgcagcttgtaaatcaaacctctttatttctttctcatttgac-tttggttttgctttggcttcctgcaaaatctttctataaaaag |
713 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2496492 |
ccttaagctttttcgcagcttgtaaatcaaacctcttcacttctttcacatttgacttttggttttgcttcggcttcctgcaaaatctttctataaaaag |
2496393 |
T |
|
| Q |
714 |
cttggaacagtcgcaatgctttcctcactttattcctggccactgagtcattct |
767 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2496392 |
cttggaacaggcgcaatgctttcctcactttattcctggccactgagtcattct |
2496339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 15 - 763
Target Start/End: Complemental strand, 4259711 - 4258960
Alignment:
| Q |
15 |
tggtgttcacagcacatattggaattttctctttcccgtaggaaatatcttcgacacatagaccttctcttgttttg---agttttttagatttcttcac |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| | || |||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
4259711 |
tggtgttcacagcacatatgggaattttctctttcccgtaggaaatatcaacaacggatagaccttctcttgttttggacaactttttagatttcttcag |
4259612 |
T |
|
| Q |
112 |
ttccttgaagacaagctctggttgtcccgggattcttcgcaagcgaaacttataaatcagcttcccatgtggtcctatatcctgccaacatgactcaact |
211 |
Q |
| |
|
|||||| | ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| || |||||||||||| ||||||||||| |
|
|
| T |
4259611 |
ttccttccaagcaagctctggttgacccggctttcttcgcaagcgaaacttataaaccagcttcccatgtggccccatatcctgccaatatgactcaact |
4259512 |
T |
|
| Q |
212 |
acataaagtccatcataaacatatatcttgctttttccatccatcgattcagagcctcgtatcaccctaacagaattctttaccacgctactgttcttca |
311 |
Q |
| |
|
|||| |||||||| |||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||| |
|
|
| T |
4259511 |
tcatagagtccatcgtaaacatatatcctgctttttccatccgctgattcagagccccgtatcaccctaacagaattcttgacctcactactgttcttca |
4259412 |
T |
|
| Q |
312 |
gagcaagattgccccgttcaagcttctgatcttctggctctttatcactgctcgtcacatttccacgctgtcctgtatatatcaaaacatctgaattatt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
4259411 |
aagcaagattgccccgttcaagcttctgatcttctggctctttatcactgctcatcacatttccaccctgccctgtatatatcaaaacatctgcattatc |
4259312 |
T |
|
| Q |
412 |
taagtcgtcagcatagccccccgaatcaacaatactagttgcaagaatcttatctttttgcttcacataatctataccaccctgaatctcgcgatgaagg |
511 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||| | ||| | ||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
4259311 |
caagtcatcagcatagccccccgaagcaacaatactagttgcaaggaccttgtttttttgcttcatataatctataccaccctgaatctggcgatgaagg |
4259212 |
T |
|
| Q |
512 |
ccaactatattaagctctattctgtattgaaattcatcaccaacttcaaccccaggaacagatcctaagatattctccccttcattaacgtagctccctt |
611 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |||||||||| |
|
|
| T |
4259211 |
ccaattatattaagctctattctgtattgaaattcatcaccaacttcaaccccaggaacagatcccatgatcttctccccttcattaacatagctccctt |
4259112 |
T |
|
| Q |
612 |
cctctttaagctttttcgcagcttgtaaatcaaacctctttatttctttctcatttgactttggttttgctttggcttcctgcaaaatctttctataaaa |
711 |
Q |
| |
|
||| ||||| |||| | |||||||||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||| ||||||| ||| |
|
|
| T |
4259111 |
tctccttaagtatttttgaagcttgtaaatcaaccctctttgattctttcacatttgactttggttttgcttccgcttcctgcaaaagctttctacaaac |
4259012 |
T |
|
| Q |
712 |
agcttggaacagtcgcaatgctttcctcactttattcctggccactgagtca |
763 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
4259011 |
agcttggaacaggcgcaatgttttcctcactttattccgggccactgagtca |
4258960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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