View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6685_2D_low_9 (Length: 482)
Name: NF6685_2D_low_9
Description: NF6685_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6685_2D_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 468
Target Start/End: Complemental strand, 40171330 - 40170882
Alignment:
| Q |
20 |
atgctctcatccagtgaaccggaaccgctgaaggaattacttgggtaaatgtccatccatctcggactacagaccacactcttaaaatcgggacaaacag |
119 |
Q |
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| T |
40171330 |
atgctctcatccagtgaagcagaaccgctgaaggaattacttgggtaaatgtccatccatctcggactacagaccacactcttaaaatctggacaaacag |
40171231 |
T |
|
| Q |
120 |
caccatcattgcttggagcaatgaatgctttaactccagtcttaatttgactagctttggtcgaacatgcctctttggagagcagaaatccactcgattt |
219 |
Q |
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| T |
40171230 |
caccatcattgcttggagcaatgaatgctttaactccagtcttaatttgactagctttggtcgaacatgcctctttggagaccagaaatccactcgatct |
40171131 |
T |
|
| Q |
220 |
tactctcgatgagggttgcaaaatgttctcggacataacatttttctgtgaactcgcaacagaatccttttttgtctttgcggttttggacacgcatgga |
319 |
Q |
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| T |
40171130 |
tattctcgatgagggttgcaaaatgttctcggacataacatttttctgcgaacttgcaatggaatccttctttgtctttgcagttttggacgcacatgga |
40171031 |
T |
|
| Q |
320 |
accttcaagtaacaaaaacagtcctattaaagtacataaaattaggacatacatgcacgaattaggatttaagttgtatatcccgatggtgtaaataaat |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40171030 |
accttcaagtaacaaaaacagtcctattaaagtacataaaatttgcacatacatgcacgaattaggatttaagttgtatatcccaatggtgtaaataaaa |
40170931 |
T |
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| Q |
420 |
tttacacatacatctaattatattcaatcattctactactgtatgatgt |
468 |
Q |
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|||||| || |||||||||||||||||||||||||||||| ||| |||| |
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| T |
40170930 |
tttacaaatgcatctaattatattcaatcattctactactttattatgt |
40170882 |
T |
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