View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6685_high_3 (Length: 246)

Name: NF6685_high_3
Description: NF6685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6685_high_3
NF6685_high_3
[»] chr5 (4 HSPs)
chr5 (18-233)||(1319245-1319460)
chr5 (18-227)||(1281258-1281467)
chr5 (42-217)||(12551924-12552099)
chr5 (96-156)||(2590849-2590909)
[»] chr4 (2 HSPs)
chr4 (20-219)||(30007173-30007372)
chr4 (93-147)||(52071741-52071795)
[»] chr3 (2 HSPs)
chr3 (90-160)||(33695345-33695415)
chr3 (33-67)||(33695180-33695214)
[»] chr1 (2 HSPs)
chr1 (93-175)||(16127379-16127461)
chr1 (93-157)||(16138907-16138971)
[»] chr8 (1 HSPs)
chr8 (93-143)||(5960394-5960444)
[»] chr7 (1 HSPs)
chr7 (93-187)||(45438006-45438100)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 1319460 - 1319245
Alignment:
Q  18 aaaatattagtggatcacattcagaaacatggccatggaagttggagagctcttccaaagcttgcaggattgaatagatgtggaaagagttgtagactta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1319460 aaaatattagtggatcacattcagaaacatggccatggaagttggagagctcttccaaagcttgcaggattgaatagatgtggaaagagttgtagactta 1319361  T
Q  118 gatggaataattatctaaggcctgatattagaagaggaaaattctctgatgaagaagaaaatctcatcatcaatttacattcagttcttggaaataagta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1319360 gatggaataattatctaaggcctgatattagaagaggaaaattctctgatgaagaagaaaatctcatcatcaatttacattcagttcttggaaataagta 1319261  T
Q  218 agcttcatcattattt 233  Q
    ||||||||||||||||    
T  1319260 agcttcatcattattt 1319245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 1281258 - 1281467
Alignment:
Q  18 aaaatattagtggatcacattcagaaacatggccatggaagttggagagctcttccaaagcttgcaggattgaatagatgtggaaagagttgtagactta 117  Q
    |||| ||||||||||||||||||||||||||| | |||| ||||||||| |||||||| || ||||||||| || ||||||||||||||||||||  | |    
T  1281258 aaaaaattagtggatcacattcagaaacatggtcctggacgttggagagatcttccaaggcgtgcaggattaaacagatgtggaaagagttgtaggttaa 1281357  T
Q  118 gatggaataattatctaaggcctgatattagaagaggaaaattctctgatgaagaagaaaatctcatcatcaatttacattcagttcttggaaataagta 217  Q
    ||||||  |||||| |||| |||||||||| |||||| ||||| ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||    
T  1281358 gatggacaaattatttaagtcctgatattaaaagagggaaattttctgatgaagaagaggaactcatcatcaatttacattcagttcttggaaataagta 1281457  T
Q  218 agcttcatca 227  Q
    ||||||||||    
T  1281458 agcttcatca 1281467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 12551924 - 12552099
Alignment:
Q  42 aaacatggccatggaagttggagagctcttccaaagcttgcaggattgaatagatgtggaaagagttgtagacttagatggaataattatctaaggcctg 141  Q
    |||||||||||||||| |||| || | ||| |||| | ||| || |||||||| ||||| |||||||||||  | || ||||  |||||| | |||||||    
T  12551924 aaacatggccatggaaattggggaacactttcaaaacgtgctggtttgaataggtgtgggaagagttgtaggttaaggtggacaaattatttgaggcctg 12552023  T
Q  142 atattagaagaggaaaattctctgatgaagaagaaaatctcatcatcaatttacattcagttcttggaaataagta 217  Q
    |||| |  ||||| |||||| |||||||||||||||   | ||||||||  | ||||||||||||||||| |||||    
T  12552024 atatcaagagagggaaattcactgatgaagaagaaagagttatcatcaaccttcattcagttcttggaaacaagta 12552099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 2590849 - 2590909
Alignment:
Q  96 tgtggaaagagttgtagacttagatggaataattatctaaggcctgatattagaagaggaa 156  Q
    ||||| |||||||||||  | |||||||  |||||| ||||||||||||||||||||||||    
T  2590849 tgtggtaagagttgtaggttgagatggataaattatttaaggcctgatattagaagaggaa 2590909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 30007173 - 30007372
Alignment:
Q  20 aatattagtggatcacattcagaaacatggccatggaagttggagagctcttccaaagcttgcaggattgaatagatgtggaaagagttgtagacttaga 119  Q
    |||||| ||| |||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| || ||||| ||||| ||     
T  30007173 aatattggtgaatcacattaagaaacatggccatggaagttggagagcacttccaaagctagcaggattgaacagatgtgggaaaagttgcagactaagg 30007272  T
Q  120 tggaataattatctaaggcctgatattagaagaggaaaattctctgatgaagaagaaaatctcatcatcaatttacattcagttcttggaaataagtaag 219  Q
    |||| ||| ||| |||| |||||||| | ||||||| ||||| | ||||||||||| ||    ||||||||||| ||| | |||||||| ||||||||||    
T  30007273 tggactaactatttaagacctgatatcaaaagaggacaattcacagatgaagaagagaaaacaatcatcaatttgcatgctgttcttgggaataagtaag 30007372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 52071795 - 52071741
Alignment:
Q  93 agatgtggaaagagttgtagacttagatggaataattatctaaggcctgatatta 147  Q
    ||||||||||| ||||||||||||||||||   ||||||||||| || |||||||    
T  52071795 agatgtggaaaaagttgtagacttagatggttgaattatctaagaccagatatta 52071741  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 33695345 - 33695415
Alignment:
Q  90 aatagatgtggaaagagttgtagacttagatggaataattatctaaggcctgatattagaagaggaaaatt 160  Q
    ||||||||||||||||||||||| || || ||||  |||||| |||||||||||||||  |||||||||||    
T  33695345 aatagatgtggaaagagttgtaggctaaggtggaccaattatttaaggcctgatattaagagaggaaaatt 33695415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 33695180 - 33695214
Alignment:
Q  33 cacattcagaaacatggccatggaagttggagagc 67  Q
    ||||||||| |||||||||||||||||||||||||    
T  33695180 cacattcagcaacatggccatggaagttggagagc 33695214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 16127461 - 16127379
Alignment:
Q  93 agatgtggaaagagttgtagacttagatggaataattatctaaggcctgatattagaagaggaaaattctctgatgaagaaga 175  Q
    ||||||||||||||||||||| | ||||||| ||||||| ||||  |||||||||  |||||||| || ||  ||||||||||    
T  16127461 agatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaaatttttcaaatgaagaaga 16127379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 16138971 - 16138907
Alignment:
Q  93 agatgtggaaagagttgtagacttagatggaataattatctaaggcctgatattagaagaggaaa 157  Q
    ||||||||||||||||||||| | ||||||| ||| ||| |||  ||||||||||  ||||||||    
T  16138971 agatgtggaaagagttgtagattgagatggattaactatttaaaacctgatattaagagaggaaa 16138907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 5960444 - 5960394
Alignment:
Q  93 agatgtggaaagagttgtagacttagatggaataattatctaaggcctgat 143  Q
    ||||||||||||||||||||| | |||||||  ||||||||||| ||||||    
T  5960444 agatgtggaaagagttgtagattaagatggataaattatctaagacctgat 5960394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 45438006 - 45438100
Alignment:
Q  93 agatgtggaaagagttgtagacttagatggaataattatctaaggcctgatattagaagaggaaaattctctgatgaagaagaaaatctcatcat 187  Q
    |||||||| ||||| ||||| ||||| |||| ||||||  ||||||||||| | | |||||| | ||| ||  | ||||||||||||||||||||    
T  45438006 agatgtggtaagagctgtaggcttaggtggattaattacttaaggcctgatttaaaaagaggtacattttcacaagaagaagaaaatctcatcat 45438100  T

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