View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6685_low_2 (Length: 368)
Name: NF6685_low_2
Description: NF6685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6685_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 36322632 - 36322291
Alignment:
| Q |
17 |
agttggttaccatgttagctgcatctgctagttcataatgcatgaaaccaacgaagtatgacacaaagttcactgctagtgcaaaagttgccatgttctc |
116 |
Q |
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| T |
36322632 |
agttggttaccatgttagctgcatctgctagttcataatgcatgaaaccaacgaagtatgacacaaagttcactgctagtgcaaaagttgccatgttctc |
36322533 |
T |
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| Q |
117 |
aagcgcaaacgcccctgcacctcacacgtacccaaattccacaattattagcaaaaataattgcaattaataatcccaataatccatattggttattttt |
216 |
Q |
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| T |
36322532 |
aagcgcaaacgcccctgcacctcacacgtacccaaattccacaattattagcaaaaataattgcaattaataatcccaataatccatattggttattttt |
36322433 |
T |
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| Q |
217 |
catgtaattatactacttactacttataaggaaaggaaaaattatccatgaaattcttggtcttaattattacctagtatgagccattaaaataaataaa |
316 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322432 |
catgtaattatactacttactacttacaaggaaaggaaaaattatccatgaaattcttggtcttaattattacctagtatgagccattaaaataaataaa |
36322333 |
T |
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| Q |
317 |
----taaagtacctagtatgaccaaagaaactttcattcccc |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
36322332 |
taaataaagtacctagtatgaccaaagaaactttcattcccc |
36322291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 36329428 - 36329310
Alignment:
| Q |
19 |
ttggttaccatgttagctgcatctgctagttcataatgcatgaaaccaacgaagtatgacacaaagttcactgctagtgcaaaagttgccatgttctcaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| | |||||||||| |||||| |
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| T |
36329428 |
ttggttaccatgttagctgcatctgctagttcataatgcataatcccaatgaagtatgacacaaagttcactgctagtgctagagttgccatgctctcaa |
36329329 |
T |
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| Q |
119 |
gcgcaaacgcccctgcacc |
137 |
Q |
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||||||||||||||||| |
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| T |
36329328 |
aagcaaacgcccctgcacc |
36329310 |
T |
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Back To:
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