View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6687_2D_high_1 (Length: 979)
Name: NF6687_2D_high_1
Description: NF6687_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6687_2D_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 460 - 956
Target Start/End: Original strand, 760112 - 760611
Alignment:
| Q |
460 |
ttgcatcactctctttattcaattgtatagatcaattaatggataaataaatattgataaaggtatttgagaatttatgttaaaattttcattacatann |
559 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
760112 |
ttgcatcactctctttgttcacttgtatagatcaattaatggataaataaatattgataaaggtatttgagaatttatgttaaaattttcattacatatt |
760211 |
T |
|
| Q |
560 |
nnnnnncgataattaggagactttatagcctttgccctttgtttctttgtcagccgccagaaaccctaa-gcagcttttccttcccaataatctcatcta |
658 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
760212 |
ttttttcgataattaggagactttataccttttgccctttgtttctttgtcagccgccagaaaccctaaagcagcttttccttcccaataatctcatcta |
760311 |
T |
|
| Q |
659 |
tctcaagcaagcttttcctttgtttagaactgatcaataccttgatgctttaagtgttttctcaaaaatgctgaattcccgtaattgttcaactctcaat |
758 |
Q |
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| T |
760312 |
ttgcaagcaagctattcctttgtttagaactgatcaataccttgctgctttaagtgttttctcaaaaatgctgaattcccgtaattgttcaactctcaac |
760411 |
T |
|
| Q |
759 |
gttgcactttttcacctttgccgcacaatggacattccca--ctttcagaatacctcagactcatgttgaaggagccaagcttattaccctggtaacata |
856 |
Q |
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| T |
760412 |
gttgcactttttcacctttgccgcacaatggacattcccactctttcagaatacctcagactcatgttgaaggagccaagcttattaccctggtaacata |
760511 |
T |
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| Q |
857 |
acttttaacaaggttttggaatccatttgtaaattgaatgatgatgtcatgccacaagtgtatcagctttttctttaacatgattcaaacggattgttct |
956 |
Q |
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| T |
760512 |
acttttaacaaggttttggaatccatttgtaaattgaatgatgatgtcatgccacaagtgtatcagctttttctttaacatgattcaaacgtattgttct |
760611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 73 - 469
Target Start/End: Original strand, 759698 - 760096
Alignment:
| Q |
73 |
taaatagtgtattagcatggttgtgca--actttatataatttgtgaaaaattnnnnnnnnnttcatgccccaacaaacacaatgagtgtcgcaacaacc |
170 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| |
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| T |
759698 |
taaatagtgtattagcatggttgtacacaactttatataatttgtgaaaaattaaaaaaaa-ttcatgccccaacaaacacaatgcgtgttgcaacaacc |
759796 |
T |
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| Q |
171 |
acattcaccacaatcacaacggccacaaccgcatccacgaccgaatttaaaaccatggttgtcagatattctatttgttgtgtcacctaattattgcgag |
270 |
Q |
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| T |
759797 |
acattcactacaatcgcaacggccacaaccgcatccacgaccgaatttaaaaccatggttgtcagatattctatttgttgtgtcacttaattattgcgag |
759896 |
T |
|
| Q |
271 |
gagtattagtttatagagaaatttaacatgtgtcataaggac--atgttataaatttaaaattgtgtcaatttatttctcaaatggttgatattaatcac |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
759897 |
gagtattagtttatagagaaatttaacatgtgtcataaggacatatgttataaatttgaaattgtgtcaatttatttctcaaattgttgatattaatca- |
759995 |
T |
|
| Q |
369 |
nnnnnnnncccaacaaatactaattatttatggaaaaccctaatgacacatattggcatcaccttcgttttattctatcaacattttatcgttgcatcac |
468 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
759996 |
tttttttccccaacaaatactaattatttatggaaaaccctaatgacacatattggcatcaccttcgttttattctatcaacattttatcgctgtatcac |
760095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 858 - 895
Target Start/End: Original strand, 5934691 - 5934728
Alignment:
| Q |
858 |
cttttaacaaggttttggaatccatttgtaaattgaat |
895 |
Q |
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| T |
5934691 |
cttttaacaaggttctggaatccatttgtaaattgaat |
5934728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 32520112 - 32520175
Alignment:
| Q |
57 |
actctactatagtggataaatagtgtattagcatggttgtgcaactttatataatttgtgaaaa |
120 |
Q |
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| T |
32520112 |
actctgctatggttgataaatagtgtaatagcatggtggtgtcactttatatagtttgtgaaaa |
32520175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 28526794 - 28526831
Alignment:
| Q |
321 |
aatttaaaattgtgtcaatttatttctcaaatggttga |
358 |
Q |
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| T |
28526794 |
aatttaaaattgtgtcaatttatttttcaaaaggttga |
28526831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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