View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6687_2D_high_16 (Length: 263)

Name: NF6687_2D_high_16
Description: NF6687_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6687_2D_high_16
NF6687_2D_high_16
[»] chr6 (3 HSPs)
chr6 (93-244)||(15702234-15702385)
chr6 (1-37)||(21072525-21072561)
chr6 (1-37)||(26522469-26522505)
[»] chr7 (1 HSPs)
chr7 (4-37)||(4340127-4340160)
[»] chr2 (2 HSPs)
chr2 (4-37)||(2429016-2429049)
chr2 (4-37)||(44488038-44488071)
[»] chr8 (1 HSPs)
chr8 (1-37)||(8910009-8910045)
[»] chr5 (2 HSPs)
chr5 (5-37)||(16752530-16752562)
chr5 (10-58)||(19842618-19842665)
[»] chr3 (1 HSPs)
chr3 (5-37)||(28266717-28266749)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 15702234 - 15702385
Alignment:
Q  93 gttgtgcacctccctaggaatggatcagatcacgcccctcttctgtttgaattagaagcttgtaccgatgaaaatcagaggaggagagtgcatttattta 192  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15702234 gttgtgcacctccctaggaatggttcagatcacgcccctcttctgtttgatttagaagcttgtactgatgaaaatcagaggaggagagtgcatttattta 15702333  T
Q  193 gatttgaagaggcttgggttaaggatgatagatgtgaagatttaattaaaga 244  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15702334 gatttgaagaggcttgggttaaggatgatagatgtgaggatttaattaaaga 15702385  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21072525 - 21072561
Alignment:
Q  1 catgtgagattagttcagttggtaaggacaatgcata 37  Q
    |||||||| |||||||| |||||||||||||||||||    
T  21072525 catgtgagcttagttcatttggtaaggacaatgcata 21072561  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26522469 - 26522505
Alignment:
Q  1 catgtgagattagttcagttggtaaggacaatgcata 37  Q
    |||||||| |||| |||||||||||||||||||||||    
T  26522469 catgtgagcttagctcagttggtaaggacaatgcata 26522505  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 4340127 - 4340160
Alignment:
Q  4 gtgagattagttcagttggtaaggacaatgcata 37  Q
    |||||||||| |||||||||||||||||||||||    
T  4340127 gtgagattagctcagttggtaaggacaatgcata 4340160  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 2429016 - 2429049
Alignment:
Q  4 gtgagattagttcagttggtaaggacaatgcata 37  Q
    ||||| ||||||||||||||||||||||||||||    
T  2429016 gtgagcttagttcagttggtaaggacaatgcata 2429049  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 44488071 - 44488038
Alignment:
Q  4 gtgagattagttcagttggtaaggacaatgcata 37  Q
    ||||| ||||||||||||||||||||||||||||    
T  44488071 gtgagtttagttcagttggtaaggacaatgcata 44488038  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8910045 - 8910009
Alignment:
Q  1 catgtgagattagttcagttggtaaggacaatgcata 37  Q
    |||||||| |||| |||||||||||||||||||||||    
T  8910045 catgtgagcttagctcagttggtaaggacaatgcata 8910009  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 16752562 - 16752530
Alignment:
Q  5 tgagattagttcagttggtaaggacaatgcata 37  Q
    |||| ||||||||||||||||||||||||||||    
T  16752562 tgagcttagttcagttggtaaggacaatgcata 16752530  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 19842665 - 19842618
Alignment:
Q  10 ttagttcagttggtaaggacaatgcatatgcaagatctagagttcgaat 58  Q
    |||||||||||| |||| |||||  ||||||||||||||||||||||||    
T  19842665 ttagttcagttgataag-acaatatatatgcaagatctagagttcgaat 19842618  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 28266717 - 28266749
Alignment:
Q  5 tgagattagttcagttggtaaggacaatgcata 37  Q
    |||| ||||||||||||||||||||||||||||    
T  28266717 tgaggttagttcagttggtaaggacaatgcata 28266749  T

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