View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6687_2D_high_3 (Length: 572)

Name: NF6687_2D_high_3
Description: NF6687_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6687_2D_high_3
NF6687_2D_high_3
[»] scaffold0003 (2 HSPs)
scaffold0003 (25-529)||(41674-42184)
scaffold0003 (24-529)||(35003-35514)
[»] chr6 (4 HSPs)
chr6 (25-529)||(27445174-27445684)
chr6 (25-526)||(20909313-20909818)
chr6 (25-526)||(20923761-20924266)
chr6 (459-515)||(22081882-22081938)
[»] chr8 (5 HSPs)
chr8 (25-345)||(42312427-42312746)
chr8 (393-529)||(43227241-43227378)
chr8 (450-526)||(42312856-42312932)
chr8 (208-244)||(8333302-8333338)
chr8 (208-244)||(15581194-15581230)
[»] chr1 (3 HSPs)
chr1 (25-326)||(41326211-41326511)
chr1 (25-98)||(47246912-47246985)
chr1 (391-526)||(41326575-41326712)
[»] chr7 (3 HSPs)
chr7 (450-529)||(11504531-11504610)
chr7 (216-345)||(11504728-11504856)
chr7 (461-511)||(18939810-18939860)
[»] chr3 (2 HSPs)
chr3 (140-239)||(50717647-50717745)
chr3 (140-239)||(50795103-50795201)
[»] chr4 (2 HSPs)
chr4 (463-500)||(30180301-30180338)
chr4 (459-515)||(37618034-37618090)
[»] chr5 (1 HSPs)
chr5 (208-244)||(11909949-11909985)


Alignment Details
Target: scaffold0003 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 25 - 529
Target Start/End: Original strand, 41674 - 42184
Alignment:
Q  25 cactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaa-tttgttttctgc 123  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||| || | |  ||| |||||||     
T  41674 cactcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataacatctttattttctgt 41773  T
Q  124 tggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgct 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||| ||||| ||||||||||    
T  41774 tggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggctaattgct 41873  T
Q  224 gcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggag 323  Q
    |||||||| ||||||    ||||||||||||||||| ||||||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41874 gcttcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggag 41973  T
Q  324 caaacatgatatttttgaa---tcaaacaaaaattgcagatttgaccatnnnnnnnggaggaaataatcgatcatagaatctaataaggtaatataacat 420  Q
    ||||||||||||||| |||   ||||||||||||||||||||| |||||       | ||||||||||||||||||||||||||||| ||||||||||||    
T  41974 caaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcgatcatagaatctaataaagtaatataacat 42073  T
Q  421 aacaacaaacac--gggacgaaagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagt 518  Q
    ||||||||||||  |||  | |||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  42074 aacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggt 42173  T
Q  519 agtggttttaa 529  Q
    |||||||||||    
T  42174 agtggttttaa 42184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 24 - 529
Target Start/End: Original strand, 35003 - 35514
Alignment:
Q  24 acactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaa-tttgttttctg 122  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||   |  ||| |||||||    
T  35003 acactcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataccatctttattttctg 35102  T
Q  123 ctggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgc 222  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||| ||||| |||||||||    
T  35103 ttggagcaaaatctgtatggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggctaattgc 35202  T
Q  223 tgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcatagga 322  Q
    ||||||||||||||||    ||||||||||||||||  |||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||    
T  35203 tgcttcagagtgccctattactttttaaatgcagaaatacatgagttagttgataattatctagcaaattcaattagcagaattcttattgtgcatagga 35302  T
Q  323 gcaaacatgatatttttgaa---tcaaacaaaaattgcagatttgaccatnnnnnnnggaggaaataatcgatcatagaatctaataaggtaatataaca 419  Q
    |||||||||||||||| |||   ||||||| ||||||||||||| |||||       | |||||||||||||||||||||| |||||| |||||||||||    
T  35303 gcaaacatgatattttggaatcctcaaacagaaattgcagatttaaccataaagaatgaaggaaataatcgatcatagaatataataaagtaatataaca 35402  T
Q  420 taacaacaaacac--gggacgaaagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatag 517  Q
    |||||||||||||  |||  | |||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  35403 taacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatgg 35502  T
Q  518 tagtggttttaa 529  Q
    ||||||||||||    
T  35503 tagtggttttaa 35514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 25 - 529
Target Start/End: Complemental strand, 27445684 - 27445174
Alignment:
Q  25 cactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaa-tttgttttctgc 123  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||| || | |  ||| |||||||     
T  27445684 cactcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataacatctttattttctgt 27445585  T
Q  124 tggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgct 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||| ||||| ||||||||||    
T  27445584 tggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggctaattgct 27445485  T
Q  224 gcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggag 323  Q
    |||||||| ||||||    ||||||||||||||||| ||||||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27445484 gcttcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggag 27445385  T
Q  324 caaacatgatatttttgaa---tcaaacaaaaattgcagatttgaccatnnnnnnnggaggaaataatcgatcatagaatctaataaggtaatataacat 420  Q
    ||||||||||||||| |||   ||||||||||||||||||||| |||||       | ||||||||||||||||||||||||||||| ||||||||||||    
T  27445384 caaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcgatcatagaatctaataaagtaatataacat 27445285  T
Q  421 aacaacaaacac--gggacgaaagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagt 518  Q
    ||||||||||||  |||  | |||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  27445284 aacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggt 27445185  T
Q  519 agtggttttaa 529  Q
    |||||||||||    
T  27445184 agtggttttaa 27445174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 25 - 526
Target Start/End: Original strand, 20909313 - 20909818
Alignment:
Q  25 cactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgttttctgct 124  Q
    ||||||||||||||||||| |||||||||||||| |||| || |||||| |||||| ||||  |||| |||||| |  ||||||   ||  |||||||||    
T  20909313 cactcaagcttggatggatttcatttaaagtcttccaaatataaaaatactacttcagaaagctcattaatagaacaaatatgattcttcattttctgct 20909412  T
Q  125 ggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgctg 224  Q
    ||| ||||||||| ||||||||||||||||||||||| |||||||||||||  |||| |||||||||||||||||||||||   |||  ||||||| |||    
T  20909413 ggaacaaaatctgattggagagaaaaggaagcaatagcaagataacacttacaaatgaactaaaaatatatgcaaacaccaatgtgtaggctaattcctg 20909512  T
Q  225 cttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagc 324  Q
    ||||||||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   ||||||||||||||||||||||    
T  20909513 cttcagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagc 20909611  T
Q  325 aaacatgatatttttgaatca--aacaaaaattgcagatttgaccatnnnnnnnggagg-aaataatcgatcatagaatctaataaggtaatataacata 421  Q
    ||| ||||| |||| ||||||  ||  |||  ||||||||| || ||         ||| |||||||  |||||||||| | |||| |||||||||||||    
T  20909612 aaatatgatgttttggaatcatcaaataaagatgcagattttactatacatatataaggaaaataattaatcatagaatatgataaagtaatataacata 20909711  T
Q  422 acaacaaacac--gggacgaaagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagta 519  Q
    |||| ||||||   ||    |||| |||  ||||| |  ||| ||| ||||||||||| ||||||| |||||||||||||| |||||||||| ||| | |    
T  20909712 acaataaacacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggca 20909811  T
Q  520 gtggttt 526  Q
    |||||||    
T  20909812 gtggttt 20909818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 25 - 526
Target Start/End: Original strand, 20923761 - 20924266
Alignment:
Q  25 cactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgttttctgct 124  Q
    ||||||||||||||||||| |||||||||||||| |||| || |||||| |||||| ||||  |||| |||||| |  ||||||   ||  |||||||||    
T  20923761 cactcaagcttggatggatttcatttaaagtcttccaaatataaaaatactacttcagaaagctcattaatagaacaaatatgattcttcattttctgct 20923860  T
Q  125 ggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgctg 224  Q
    ||| ||||||||| ||||||||||||||||||||||| |||||||||||||  |||| |||||||||||||||||||||||   |||  ||||||| |||    
T  20923861 ggaacaaaatctgattggagagaaaaggaagcaatagcaagataacacttacaaatgaactaaaaatatatgcaaacaccaatgtgtaggctaattcctg 20923960  T
Q  225 cttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagc 324  Q
    ||||||||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   ||||||||||||||||||||||    
T  20923961 cttcagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagc 20924059  T
Q  325 aaacatgatatttttgaatca--aacaaaaattgcagatttgaccatnnnnnnnggagg-aaataatcgatcatagaatctaataaggtaatataacata 421  Q
    ||| ||||| |||| ||||||  ||  |||  ||||||||| || ||         ||| |||||||  |||||||||| | |||| |||||||||||||    
T  20924060 aaatatgatgttttggaatcatcaaataaagatgcagattttactatacatatataaggaaaataattaatcatagaatatgataaagtaatataacata 20924159  T
Q  422 acaacaaacac--gggacgaaagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagta 519  Q
    |||| ||||||   ||    |||| |||  ||||| |  ||| ||| ||||||||||| ||||||| |||||||||||||| |||||||||| ||| | |    
T  20924160 acaataaacacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggca 20924259  T
Q  520 gtggttt 526  Q
    |||||||    
T  20924260 gtggttt 20924266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 22081938 - 22081882
Alignment:
Q  459 acaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctat 515  Q
    ||||||||| |||| |||||||||||  ||||||||||||||  | |||||||||||    
T  22081938 acaaagataacttcatgtcaaacaacgcttgattctaaaactcctacttcatcctat 22081882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 7e-69; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 25 - 345
Target Start/End: Original strand, 42312427 - 42312746
Alignment:
Q  25 cactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgttttctgct 124  Q
    ||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||  ||||  |||| |||||| || ||||||   ||  |||||||||    
T  42312427 cactcaagcttggatggatttcatttaaagtcttccaaaaataaaaatactactttagaaagctcattaatagaactaatatgattcttcattttctgct 42312526  T
Q  125 ggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgctg 224  Q
     || ||||||||| |||||||||||||||||||||||||||||||||||||  |||| |||||||||||| ||||||||||   |||  ||||||| |||    
T  42312527 agaacaaaatctgattggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatgtgtaggctaatttctg 42312626  T
Q  225 cttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagc 324  Q
    ||||| ||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   ||||||||||||||||||||||    
T  42312627 cttcatagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagc 42312725  T
Q  325 aaacatgatatttttgaatca 345  Q
    |||| |||| |||| ||||||    
T  42312726 aaacgtgatgttttggaatca 42312746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 393 - 529
Target Start/End: Complemental strand, 43227378 - 43227241
Alignment:
Q  393 catagaatctaataaggtaatataacataacaacaaacacgggacga-aagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgat 491  Q
    |||| ||||| |||| |||||||||||||| ||||||||||  |||  |||| | || ||||| || | | |||||||||||||||||| |||| |||||    
T  43227378 cataaaatctgataaagtaatataacataataacaaacacgctacgtcaagtaacatgtcttcaactatagagatatcttcctgtcaaagaacacttgat 43227279  T
Q  492 tctaaaactattgcttcatcctatagtagtggttttaa 529  Q
    ||||||||| |||||||||||||| ||||| |||||||    
T  43227278 tctaaaactcttgcttcatcctatggtagtagttttaa 43227241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 526
Target Start/End: Original strand, 42312856 - 42312932
Alignment:
Q  450 tcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttt 526  Q
    |||||||  ||| ||| ||||||||||| ||||||| |||||||||| ||| |||||||||| ||| | ||||||||    
T  42312856 tcttcgattacagagagatcttcctgtcgaacaacacttgattctaatactcttgcttcatcgtatggcagtggttt 42312932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 8333338 - 8333302
Alignment:
Q  208 atgttagctaattgctgcttcagagtgcccttcccct 244  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  8333338 atgttggctaattgctgcttcagagtgccctttccct 8333302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 15581194 - 15581230
Alignment:
Q  208 atgttagctaattgctgcttcagagtgcccttcccct 244  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  15581194 atgttagctaattgctgcttcagagtaccctttccct 15581230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 2e-57; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 25 - 326
Target Start/End: Original strand, 41326211 - 41326511
Alignment:
Q  25 cactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgttttctgct 124  Q
    ||||||||||||||||||| ||||||||| |||| ||||||| |||||| |||||| ||||  | || |||||| || ||||||   ||  |||||||||    
T  41326211 cactcaagcttggatggatttcatttaaattcttccaaaaataaaaatactacttcagaaagcttattaatagaactaatatgattcttcattttctgct 41326310  T
Q  125 ggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgctg 224  Q
    ||| ||||||||| |||||||||||||||||||||||||||||||||||||  |||| |||||||||||| ||||||||||   | |  |  |||| ||     
T  41326311 ggaacaaaatctgattggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatgtatagggaaattccta 41326410  T
Q  225 cttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagc 324  Q
    ||||||||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   ||||||||||||||||||||||    
T  41326411 cttcagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagc 41326509  T
Q  325 aa 326  Q
    ||    
T  41326510 aa 41326511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 47246985 - 47246912
Alignment:
Q  25 cactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaataga 98  Q
    ||||||||||||||||||| |||||||||| ||| ||||||| |||||| |||||| ||||  |||| ||||||    
T  47246985 cactcaagcttggatggatttcatttaaagccttccaaaaataaaaatactacttcagaaagctcattaataga 47246912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 526
Target Start/End: Original strand, 41326575 - 41326712
Alignment:
Q  391 atcatagaatctaataaggtaatataacataacaacaaacacgggacga--aagttagatatcttcgacaacaaagatatcttcctgtcaaacaacattt 488  Q
    |||||||||| | |||| ||||||||||||||||| |||||| |    |  |||| |||  |||||||  ||| ||| ||||||||||| ||||| | ||    
T  41326575 atcatagaatatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaaaactt 41326674  T
Q  489 gattctaaaactattgcttcatcctatagtagtggttt 526  Q
    |||||||||||| |||||||||| ||| | ||||||||    
T  41326675 gattctaaaactcttgcttcatcatatggcagtggttt 41326712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 450 - 529
Target Start/End: Complemental strand, 11504610 - 11504531
Alignment:
Q  450 tcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttttaa 529  Q
    |||||||  |||||||||||||| |||||||||||| |||||||||||||| |||||||||| ||| |||||||||||||    
T  11504610 tcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtggttttaa 11504531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 345
Target Start/End: Complemental strand, 11504856 - 11504728
Alignment:
Q  216 taattgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtg 315  Q
    |||||||||||| |||||||| || ||||||| ||||| | ||| |||||||||| || |||||||||||  |||||||||| |   |||||||||||||    
T  11504856 taattgctgctttagagtgccatttccctttt-aaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtg 11504758  T
Q  316 cataggagcaaacatgatatttttgaatca 345  Q
    |||||||| |||||| || |||| ||||||    
T  11504757 cataggagtaaacataatgttttagaatca 11504728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 18939810 - 18939860
Alignment:
Q  461 aaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatc 511  Q
    ||||||||||||||  ||||||||| |||||||||||||| ||| ||||||    
T  18939810 aaagatatcttccttccaaacaacacttgattctaaaactcttgattcatc 18939860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 50717745 - 50717647
Alignment:
Q  140 tggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgctgcttcagagtgccctt 239  Q
    ||||| ||||||||| ||||| ||||||||||||||  || | |||||||| ||||||||||||||  ||||| || ||||| || ||| | ||||||||    
T  50717745 tggagtgaaaaggaatcaataataagataacactta-caaagaactaaaaaaatatgcaaacaccaatatgttggcgaattgatgattcggtgtgccctt 50717647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 50795103 - 50795201
Alignment:
Q  140 tggagagaaaaggaagcaatagtaagataacacttatgaatgcactaaaaatatatgcaaacaccagcatgttagctaattgctgcttcagagtgccctt 239  Q
    ||||| ||||||||| ||||| ||||||||||||||  || | |||||||| ||||||||||||||  ||||| || ||||| || ||| | ||||||||    
T  50795103 tggagtgaaaaggaatcaataataagataacactta-caaagaactaaaaaaatatgcaaacaccaatatgttggcgaattgatgattcggtgtgccctt 50795201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 30180338 - 30180301
Alignment:
Q  463 agatatcttcctgtcaaacaacatttgattctaaaact 500  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  30180338 agatatcttcttgtcaaacaacaattgattctaaaact 30180301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 37618034 - 37618090
Alignment:
Q  459 acaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctat 515  Q
    ||||||||| |||| |||||||||||  ||||||||||||||  | |||||||||||    
T  37618034 acaaagataacttcatgtcaaacaacgcttgattctaaaactccttcttcatcctat 37618090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 11909949 - 11909985
Alignment:
Q  208 atgttagctaattgctgcttcagagtgcccttcccct 244  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  11909949 atgttggctaattgctgcttcagagtgccctttccct 11909985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University