View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6687_2D_high_5 (Length: 453)
Name: NF6687_2D_high_5
Description: NF6687_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6687_2D_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 49684100 - 49684534
Alignment:
| Q |
1 |
ccacgttgagatgaaattgttgaagaataagaagttaacacctcctacagctatgacagataaatcgtatagtgaatcgactgcttctaatgtcagtggt |
100 |
Q |
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| T |
49684100 |
ccacgttgagatgaaattgttgaagaataagaagttaacacctcctacagctatgacagataaatcgtatagtgaatcgactgcttctaatgtcagtggt |
49684199 |
T |
|
| Q |
101 |
caatcggcgagccgaatgtaatatgacactagtaaattgaacctttaatatttcagtagataatgataagatttcatcagcacttgtcataggatccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49684200 |
caatcggcgagccgaatgtaatatgacactagtaaattgaacctttaatatttcagtagataatgataagatttcatcagcacttgtcataggatccaaa |
49684299 |
T |
|
| Q |
201 |
ggttagccaaaaacttatgtatactctattagtaatgtgacatatcttgaaaattggttgttttttctttattgatttatcttgttgtgtggatgcaagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49684300 |
ggttagccaaaaacttatgtatactctattagtaatgtgacatatcttgaaaattggttgttttttctttattgatttatcttgttgtgtggatgcaagt |
49684399 |
T |
|
| Q |
301 |
tcctgactgataattctttgagtcgaattgaccaattcaaaactggatactgaacttcaaaatttatatattagcatattccttaactatgttttctcca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| | |
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| T |
49684400 |
tcctgactgataattctttgagtcgaattgaccaattcaaaactggatactgaacttcgaaatttacatattagcatattccttaactatgttttctcta |
49684499 |
T |
|
| Q |
401 |
attgcataattaaagttgttaatattcatatttag |
435 |
Q |
| |
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| T |
49684500 |
attgcataattaaagttgttaatattcatatttag |
49684534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 49676070 - 49676198
Alignment:
| Q |
2 |
cacgttgagatgaaattgttgaagaataagaagttaacacctcctacagctatgacagataaatcgtatagtgaatcgactgcttctaatgtcagtggtc |
101 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| ||||||| | | |||| ||||||| | |||||||||||||| ||||||||||||| |||| |
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| T |
49676070 |
cacgttgagatgaaattgttgaagaataaaaagttaacgtctcctacgggtgtgacggataaatgggatagtgaatcgactacttctaatgtcagcggtc |
49676169 |
T |
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| Q |
102 |
aatcggcgagccgaatgtaatatgacact |
130 |
Q |
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| || || ||||| || |||||| ||||| |
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| T |
49676170 |
agtcagcaagccggatttaatataacact |
49676198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 408
Target Start/End: Original strand, 20059440 - 20059584
Alignment:
| Q |
262 |
tttttctttattgatttatcttgttgtgt--ggatgcaagttcctgactgataattctttgagtcgaattgaccaattcaaaactggatactgaacttca |
359 |
Q |
| |
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|||||||||||||||||| ||| || ||| ||||||| ||| |||||| |||||||||||| || |||| |||||| |||||||||||||||||| |
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| T |
20059440 |
tttttctttattgatttaactttttttgtatggatgcaggtttctgactaataattctttga-----atggaccgattcaagactggatactgaacttca |
20059534 |
T |
|
| Q |
360 |
aaatttatatattagcata-ttccttaactatgttttctccaattgcata |
408 |
Q |
| |
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||||| | || |||||||| ||| | || ||| |||||||||||||||| |
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|
| T |
20059535 |
aaattaacatgttagcatatttcacttaccatgctttctccaattgcata |
20059584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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