View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6687_2D_high_8 (Length: 326)
Name: NF6687_2D_high_8
Description: NF6687_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6687_2D_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 24 - 307
Target Start/End: Original strand, 29723987 - 29724270
Alignment:
| Q |
24 |
caacatgttttgcataagctatagctccacaacagttggataagagaatctccaacagcaacacaacaaagattgctccaactaacttcagagacacaac |
123 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29723987 |
caacatgtttggcataagctatagctccacaacagttggataagagaatctccaacagcaacacaacaaagattgctccaactaacttcagagacacaac |
29724086 |
T |
|
| Q |
124 |
actactcatcatcttaatctttgctttcaacttattattattatttcttctcacattcagaaacaagatacaaatggcaatacttattaataatgcagta |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29724087 |
actactcatcatcttaatctttgctttcaacttattattattatttcttctcacattcagaaacaagatacaaatggcaatacttattaataatgcagta |
29724186 |
T |
|
| Q |
224 |
atgccaaatgggaagacttgctacaaagactcacaaacatcgcccaacaaaatgtggaaaaaaggtacatcatgatgatgcatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29724187 |
atgccaaatgggaagacttgctacaaagactcgcaaacatcgcccaacaaaatgtggaaaaaaggtacatcatgatgatgcatt |
29724270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 37143918 - 37143799
Alignment:
| Q |
25 |
aacatgttttgcataagctatagctccacaacagttggataagagaatctccaacagcaacacaacaaagattgctccaactaacttcagagacacaaca |
124 |
Q |
| |
|
||||| ||||||| ||||| ||||||| || ||||||| ||||||||| | || ||||||||| ||||||||||||||||||||| | ||| ||||| |
|
|
| T |
37143918 |
aacattttttgcagcagctacagctccagaatagttggacaagagaatcgcaaattgcaacacaataaagattgctccaactaacttgatagaaacaacg |
37143819 |
T |
|
| Q |
125 |
ctactcatcatcttaatctt |
144 |
Q |
| |
|
| ||||||||||| ||||| |
|
|
| T |
37143818 |
gtgctcatcatcttcatctt |
37143799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 35145055 - 35145169
Alignment:
| Q |
21 |
aaccaacatgttttgcataagctatagctccacaacagttggataagagaatctccaacagcaacacaacaaagattgctccaactaacttcagagacac |
120 |
Q |
| |
|
||||||||||||||||| ||| | |||||||| ||||||| || |||| ||| ||| |||||| ||| |||||| |||||||||||||| |||| | |
|
|
| T |
35145055 |
aaccaacatgttttgcaa---ctacaactccacaatagttggacaaaagaagctctaactgcaacaatacatagattgttccaactaacttcatagaccc |
35145151 |
T |
|
| Q |
121 |
aacactactcatcatctt |
138 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
35145152 |
aacagtactcatcatctt |
35145169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 37162364 - 37162277
Alignment:
| Q |
24 |
caacatgttttgcataagctatagctccacaacagttggataagagaatctccaacagcaacacaacaaagattgctccaactaactt |
111 |
Q |
| |
|
||||||||||||||| | | | ||||||| || ||||||| || |||| | ||| |||||| |||||||||||||||||||||||| |
|
|
| T |
37162364 |
caacatgttttgcatcaaccacagctccataatagttggacaaaagaaagccgaactgcaacagaacaaagattgctccaactaactt |
37162277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 37136815 - 37136782
Alignment:
| Q |
1 |
atgtctctccttctccatgcaaccaacatgtttt |
34 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
37136815 |
atgtctctccttctctatgcaaccaacatgtttt |
37136782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University