View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6687_2D_low_13 (Length: 409)
Name: NF6687_2D_low_13
Description: NF6687_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6687_2D_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 22 - 391
Target Start/End: Complemental strand, 7655485 - 7655116
Alignment:
| Q |
22 |
tagttcctaacgtcgttgaaaggaaaaaatgaatggacaaccgaaggaacatatgtgggttttaggatgtcagcaacacaagtattctttgctgcagcat |
121 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
7655485 |
tagtttctaacgtcattgaaaggaaaaaatgaacgaacaaccgaaggaacatatgtgggttttaggatgtcagcaacacaagtatccttggctgcagcat |
7655386 |
T |
|
| Q |
122 |
gtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgtcttcgtgttctgtaattttgagacgaccggcaagaggttggaaaaa |
221 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7655385 |
gtataaagtttacacctgcattattgcatgttacagaacacgagacaatgctgtcttcgtgttctgtaattttgagacgaccggcaagaggttggaaaaa |
7655286 |
T |
|
| Q |
222 |
ggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaaaggatggtgataaagaaggccttttttattggttggataaagtaga |
321 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7655285 |
ggaaagggctgaggataaagagtgtgtcagccgttgaatttggtctgatgctaaaggatggtgataaagaaggccttttttattggttggataaagtaga |
7655186 |
T |
|
| Q |
322 |
aattggagatcccatggagttaaatcgattttatgattacttgatttcaatgccttgattgtattggtgg |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7655185 |
aattggagatcccatggagttaaatcgattttatgattacttgatttcaatgccttgattgtattggtgg |
7655116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 70 - 385
Target Start/End: Original strand, 7616054 - 7616369
Alignment:
| Q |
70 |
acatatgtgggttttaggatgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacag |
169 |
Q |
| |
|
||||| || |||| |||||||||||||||||||||||||| ||||||||||| | |||| |||||||||||| |||||| | |||||||||||||| | |
|
|
| T |
7616054 |
acataggtaggttctaggatgtcagcaacacaagtattctcagctgcagcatggataaagagtacacctgcattgttgcatataacagaacacgagacgg |
7616153 |
T |
|
| Q |
170 |
tgttgtcttcgtgttctgtaattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctga |
269 |
Q |
| |
|
||||||| | ||| || || ||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||| |||||||||| ||||||| | |
|
|
| T |
7616154 |
tgttgtcattgtgctccgttattttgagacggccggaaagaggttggaaaaaggcaagggcagaggacaaagagtgtctcagccgttggatttggttagc |
7616253 |
T |
|
| Q |
270 |
tgctaaaggatggtgataaagaaggccttttttattggttggataaagtagaaattggagatcccatggagttaaatcgattttatgattacttgatttc |
369 |
Q |
| |
|
| | | ||||||||||||||||| || ||| ||||||| | ||||||||| |||||||||||||||| ||||| || | |||||||||||||| |
|
|
| T |
7616254 |
ttcaactggatggtgataaagaagaccctttgggttggttgtaccaagtagaaaccggagatcccatggagtcaaatcaatagtttgattacttgatttt |
7616353 |
T |
|
| Q |
370 |
aatgccttgattgtat |
385 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
7616354 |
ggtgccttaattgtat |
7616369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 76 - 391
Target Start/End: Original strand, 7637895 - 7638210
Alignment:
| Q |
76 |
gtgggttttaggatgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgt |
175 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||| |||||| ||||| |||||| |||||||||||| |||||| | || |||||||| |||||||||| |
|
|
| T |
7637895 |
gtgggttctaggatgtctgcaacacaagtattctctgctgcggcatggacaaagagtacacctgcattgttgcatataacggaacacgaaacagtgttgt |
7637994 |
T |
|
| Q |
176 |
cttcgtgttctgtaattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaa |
275 |
Q |
| |
|
|| |||||| || ||||||||||| |||||||||||||||||||||| |||||| ||||| | ||||||| |||||||||| ||||||| | | | | |
|
|
| T |
7637995 |
ctctgtgttccgttattttgagacggccggcaagaggttggaaaaaggcaagggctgaggacagagagtgtctcagccgttggatttggttagctacaac |
7638094 |
T |
|
| Q |
276 |
aggatggtgataaagaaggccttttttattggttggataaagtagaaattggagatcccatggagttaaatcgattttatgattacttgatttcaatgcc |
375 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||| | ||||||| | |||||||||||||||| |||| |||| | || | ||||||||| |||| |
|
|
| T |
7638095 |
cggatggcgataaagaaggccctttttgttggttaaaacaagtagataccggagatcccatggagtcaaatggattgtttgctcacttgattttggtgcc |
7638194 |
T |
|
| Q |
376 |
ttgattgtattggtgg |
391 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
7638195 |
ttgattgtatcggtgg |
7638210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 79 - 385
Target Start/End: Original strand, 7629452 - 7629758
Alignment:
| Q |
79 |
ggttttaggatgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgtctt |
178 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||| || | |||| |||||||||||| |||||| | ||||||||||||||||| ||||| | |
|
|
| T |
7629452 |
ggttctaggatgtcagcaacacaagtattctcggctgcagcgtggataaagagtacacctgcattgttgcatataacagaacacgagacagtattgtcct |
7629551 |
T |
|
| Q |
179 |
cgtgttctgtaattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaaagg |
278 |
Q |
| |
|
|||||| || |||| ||||| || ||||||||||| |||||||||||||||||||||| ||||||| |||||||||| |||||| || | | | || |
|
|
| T |
7629552 |
tgtgttccgttatttcaagacggccagcaagaggttgaaaaaaggaaagggcagaggatagagagtgtctcagccgttggatttgggttgctacaaccgg |
7629651 |
T |
|
| Q |
279 |
atggtgataaagaaggccttttttattggttggataaagtagaaattggagatcccatggagttaaatcgattttatgattacttgatttcaatgccttg |
378 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||| | ||||||||| |||||||||||||||| |||| |||| | || | ||||||||| ||||||| |
|
|
| T |
7629652 |
atggcgataaagaaggccctttttgttggttgaaacaagtagaaagcggagatcccatggagtcaaatggattgtttggtcacttgattttggtgccttg |
7629751 |
T |
|
| Q |
379 |
attgtat |
385 |
Q |
| |
|
||||||| |
|
|
| T |
7629752 |
attgtat |
7629758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 85 - 385
Target Start/End: Original strand, 7607073 - 7607373
Alignment:
| Q |
85 |
aggatgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgtcttcgtgtt |
184 |
Q |
| |
|
|||||||||||||||| | |||||| |||| |||| || | |||| ||||||||||||||||||| | || ||||| |||||| |||||||| |||| |
|
|
| T |
7607073 |
aggatgtcagcaacacgaatattctctgctacagcgtggataaagagtacacctgcattattgcatataacggaacatgagacaatgttgtctctatgtt |
7607172 |
T |
|
| Q |
185 |
ctgtaattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaaaggatggtg |
284 |
Q |
| |
|
| || |||| || || ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||| || | | ||||| || |
|
|
| T |
7607173 |
ccgttatttcaaggcggccggcaagaggttggaaaaaggaaagggcagaggatagagagtgtctcaaccgttggatttgggttgcaaccaccggatgatg |
7607272 |
T |
|
| Q |
285 |
ataaagaaggccttttttattggttggataaagtagaaattggagatcccatggagttaaatcgattttatgattacttgatttcaatgccttgattgta |
384 |
Q |
| |
|
|||||||||||| ||||| ||||||| | ||||||||| |||||||||||||||| |||| |||| | |||| ||||||||| ||||||||||||| |
|
|
| T |
7607273 |
ataaagaaggccctttttgttggttgaaacaagtagaaaacggagatcccatggagtcaaatggattgtttgatcacttgattttggtgccttgattgta |
7607372 |
T |
|
| Q |
385 |
t |
385 |
Q |
| |
|
| |
|
|
| T |
7607373 |
t |
7607373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 39089073 - 39089105
Alignment:
| Q |
319 |
agaaattggagatcccatggagttaaatcgatt |
351 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
39089073 |
agaaattggagatcccatggtgttaaatcgatt |
39089105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 76 - 385
Target Start/End: Complemental strand, 8935392 - 8935083
Alignment:
| Q |
76 |
gtgggttttaggatgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgt |
175 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| || | ||||| |||||| |||||||||||| |||||| | || || ||||||||||| |||| |
|
|
| T |
8935392 |
gtgggttctagaatgtcagcaacacaagtattctctgatctggcatggacaaagagtacacctgcattgttgcatataacggagcacgagacagttttgt |
8935293 |
T |
|
| Q |
176 |
cttcgtgttctgtaattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaa |
275 |
Q |
| |
|
||| || ||| || ||||||||||| |||||||||||||||||||||| ||||| || |||| ||||||| |||||||||| ||||||| ||| | | |
|
|
| T |
8935292 |
cttggtattccgttattttgagacggccggcaagaggttggaaaaaggcaagggttgaagatagagagtgtctcagccgttggatttggttagatacaac |
8935193 |
T |
|
| Q |
276 |
aggatggtgataaagaaggccttttttattggttggataaagtagaaattggagatcccatggagttaaatcgattttatgattacttgatttcaatgcc |
375 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||||| |||||| | |||||||||||||||| |||| ||| | |||| ||||||||| |||| |
|
|
| T |
8935192 |
cggatggtgataaaaaaggccctttttgttggttggaataagtagtgaccggagatcccatggagtcaaatggatcgtttgatcacttgattttgttgcc |
8935093 |
T |
|
| Q |
376 |
ttgattgtat |
385 |
Q |
| |
|
|| ||||||| |
|
|
| T |
8935092 |
ttaattgtat |
8935083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 76 - 312
Target Start/End: Complemental strand, 8934451 - 8934215
Alignment:
| Q |
76 |
gtgggttttaggatgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgt |
175 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| || | ||||| |||||| |||| ||||||| |||||| | || || ||||||||||| |||| |
|
|
| T |
8934451 |
gtgggttctagaatgtcagcaacacaagtattctctgatctggcatggacaaagagtacatctgcattgttgcatataacggagcacgagacagttttgt |
8934352 |
T |
|
| Q |
176 |
cttcgtgttctgtaattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaa |
275 |
Q |
| |
|
||| || ||| || ||||||||||||||| |||||||||||||||||| ||||| || |||| ||||||| | ||| |||| ||||||| ||| | | |
|
|
| T |
8934351 |
cttggtattccgttattttgagacgaccgacaagaggttggaaaaaggcaagggttgaagatagagagtgtcttagctgttggatttggttagatacaac |
8934252 |
T |
|
| Q |
276 |
aggatggtgataaagaaggccttttttattggttgga |
312 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
8934251 |
cggatggtaataaagaaggccctttttgttggttgga |
8934215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 8929996 - 8929902
Alignment:
| Q |
76 |
gtgggttttaggatgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagt |
170 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| || | ||||| |||||| |||| ||||||| |||||| | || || ||||||||||| |
|
|
| T |
8929996 |
gtgggttctagaatgtcagcaacacaagtattctctgatctggcatgaacaaagagtacaactgcattgttgcatataacggagcacgagacagt |
8929902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 365
Target Start/End: Complemental strand, 40146668 - 40146391
Alignment:
| Q |
88 |
atgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgtcttcgtgttctg |
187 |
Q |
| |
|
|||||| | |||||||| |||| ||| |||||||| |||||| | |||||||| |||||||| || ||||| || || |||||||| | ||| |||| |
|
|
| T |
40146668 |
atgtcacctacacaagtgttctctgccgcagcatggacaaagagcgcgcctgcattgttgcatgtgacggaacatgaaacggtgttgtccttgtgatctg |
40146569 |
T |
|
| Q |
188 |
taattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaaaggatggtgata |
287 |
Q |
| |
|
| |||| ||||| || ||||| ||| ||||||||| ||||| ||| |||| |||||||||||| |||||||||||| || ||| |||||||||||| |
|
|
| T |
40146568 |
ttatttctagacggcctgcaagtggtgggaaaaaggcaagggtagaagatagagagtgtttcagatgttgaatttggtttggcactagaggatggtgata |
40146469 |
T |
|
| Q |
288 |
aagaaggccttttttattggttggataaagtagaaattggagatcccatggagttaaatcgattttatgattacttga |
365 |
Q |
| |
|
|||||| || ||||| ||| || | ||||| | |||||||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
40146468 |
aagaagaccctttttggtgggtgcaattagtaggtaccggagatcccatggagttaaatcaattttttgatcacttga |
40146391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 293
Target Start/End: Complemental strand, 40409613 - 40409454
Alignment:
| Q |
134 |
cacctgcattattgcatgttacagaacacgagacagtgttgtcttcgtgttctgtaattttgagacgaccggcaagaggttggaaaaaggaaagggcaga |
233 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||| | |||||||||| || ||||| | | ||||| || ||||| ||| ||||||||| ||||||||| |
|
|
| T |
40409613 |
cacctgcattgttgcatgtgacacaacacgaaatggtgttgtctttatggtctgttctctctagacggcctgcaagtggtgggaaaaaggcaagggcaga |
40409514 |
T |
|
| Q |
234 |
ggataaagagtgtttcagccgttgaatttggtctgatgctaaaggatggtgataaagaag |
293 |
Q |
| |
|
||||| |||||||||||| |||||||||||| || ||| ||||||||||| |||||| |
|
|
| T |
40409513 |
ggatagagagtgtttcagatgttgaatttggtttggcactagaggatggtgatgaagaag |
40409454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 290
Target Start/End: Original strand, 8103316 - 8103518
Alignment:
| Q |
88 |
atgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgtcttcgtgttctg |
187 |
Q |
| |
|
|||||| | |||||||| |||| | || |||||| |||||| |||||| ||||| ||||| || || |||||||| | ||||||||||| || |||| |
|
|
| T |
8103316 |
atgtcacctacacaagtgttctcagttgtagcatggacaaagagtacaccggcattgttgcacgtgaccgaacacgacatggtgttgtcttcatggtctg |
8103415 |
T |
|
| Q |
188 |
taattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaaaggatggtgata |
287 |
Q |
| |
|
| |||| ||||| || ||||| || ||||||| | ||| | ||| |||| ||| ||||| ||| || ||||||||| ||| ||| ||||||||| || |
|
|
| T |
8103416 |
ttatttctagacggcctgcaagtagtgggaaaaaagcaagagtagatgatagagattgttttagctgtggaatttggtttgactctagaggatggtggta |
8103515 |
T |
|
| Q |
288 |
aag |
290 |
Q |
| |
|
||| |
|
|
| T |
8103516 |
aag |
8103518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 246
Target Start/End: Original strand, 6501373 - 6501505
Alignment:
| Q |
114 |
tgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgtcttcgtgttctgtaattttgagacgaccggcaagaggt |
213 |
Q |
| |
|
|||||| || |||||| |||||||||||| |||||||| | ||||| || ||| |||||||||||| ||| || ||||||||||| || ||||| ||| |
|
|
| T |
6501373 |
tgcagcgtggacaaagagtacacctgcattgttgcatgtgatggaacatgaaacattgttgtcttcgttttccgtcattttgagacggcccgcaagtggt |
6501472 |
T |
|
| Q |
214 |
tggaaaaaggaaagggcagaggataaagagtgt |
246 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| |
|
|
| T |
6501473 |
tggaaaaaggcaaggacagaggataaagagtgt |
6501505 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 15190466 - 15190351
Alignment:
| Q |
88 |
atgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgtcttcgtgttctg |
187 |
Q |
| |
|
||||| |||||||| || |||| |||| ||||| |||||| | |||| ||||| ||||||| | |||||||| | |||||| ||||||||||||| |
|
|
| T |
15190466 |
atgtcggcaacacatgtgttctctgcttttgcatgaacaaagagtgcaccagcatttttgcatgcaagggaacacgaaatagtgttatcttcgtgttctg |
15190367 |
T |
|
| Q |
188 |
taattttgagacgacc |
203 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
15190366 |
taatttcgagacgacc |
15190351 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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