View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6687_2D_low_15 (Length: 389)

Name: NF6687_2D_low_15
Description: NF6687_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6687_2D_low_15
NF6687_2D_low_15
[»] chr3 (2 HSPs)
chr3 (9-343)||(40737727-40738066)
chr3 (22-75)||(10437141-10437194)
[»] chr2 (1 HSPs)
chr2 (16-306)||(26624821-26625116)
[»] chr4 (7 HSPs)
chr4 (214-315)||(6355601-6355702)
chr4 (19-78)||(23805855-23805914)
chr4 (13-62)||(10252444-10252493)
chr4 (12-107)||(6355825-6355920)
chr4 (130-171)||(6355742-6355783)
chr4 (22-77)||(47591165-47591220)
chr4 (238-295)||(23805617-23805674)
[»] chr1 (4 HSPs)
chr1 (11-61)||(23912413-23912463)
chr1 (22-77)||(26676234-26676289)
chr1 (10-62)||(36016018-36016070)
chr1 (24-78)||(33727762-33727816)
[»] chr8 (3 HSPs)
chr8 (17-77)||(30999044-30999104)
chr8 (22-77)||(9932806-9932861)
chr8 (17-59)||(15728827-15728869)
[»] chr5 (1 HSPs)
chr5 (22-77)||(26369645-26369700)
[»] chr7 (2 HSPs)
chr7 (67-134)||(22789201-22789268)
chr7 (21-77)||(32574808-32574864)
[»] chr6 (1 HSPs)
chr6 (26-75)||(13737059-13737108)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 40737727 - 40738066
Alignment:
Q  9 ggacatcatgtaattataagcacttgttacattgtacttgttggaagcatgtaagtgtcaaaaccacctacaaagactattttgctgcaaaacaatattg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  40737727 ggacatcatgtaattataagcacttgttacattgtacttgttggaagcatgtaagtgcaaaaaccacctacaaatactattttgctgcaaaacaatattg 40737826  T
Q  109 attgcgatctcacaacattccctaataacctacgccgcaacttccaagcttcaccatcctccctctaagagaaaacatttcagtcaccgttgtaa----- 203  Q
    |||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||         
T  40737827 attgagatctcacaacactccctaataacctacgccgcgacttccaagcttcaccatcctccccctaagagaaaacatttcagccaccgttgtaattttt 40737926  T
Q  204 annnnnnnngttaacaactagatcaaaaaattggctaaaattattcttcaagatcataccatcaatcaacaggtcccaccaaaatagagtttcagtgtca 303  Q
             ||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  40737927 ttttttgttgttaacagctagatcaaaaaaccggctaaaattattcttcaagatcataccatcaatcaacaggtcccaccaaaatagagtttcggtgcca 40738026  T
Q  304 tcttcaatctccttttataatttattaaatttaaaccccc 343  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40738027 tcttcaatctccttttataatttattaaatttaaaccccc 40738066  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 10437141 - 10437194
Alignment:
Q  22 ttataagcacttgttacattgtacttgttggaagcatgtaagtgtcaaaaccac 75  Q
    |||||||||||||| ||||| || |||||||||||||||||||| |||| ||||    
T  10437141 ttataagcacttgtgacattataattgttggaagcatgtaagtgccaaatccac 10437194  T

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Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 26625116 - 26624821
Alignment:
Q  16 atgtaattataagcacttgttacattgtacttgttggaagcatgtaagtgtcaaaaccacctacaaagactattttgctgcaaaacaatattgattgcga 115  Q
    |||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||| |  | || ||||  ||||||||||||||||||||  ||    
T  26625116 atgtcattataagcacttgttacgttgtatttgttggaatcatgtaagtgtcaaagccacccattatgaatattaggctgcaaaacaatattgattaaga 26625017  T
Q  116 tctcacaacattccctaa---taacctacgcc---gcaacttccaagcttcaccatcctccc----tctaagagaaaacatttcagtcaccgttgtaaan 205  Q
    |||||||||| ||| |||   |  | | | ||   || ||||||||||||||||||||||||     | ||||||||| ||||||| |||||||          
T  26625016 tctcacaacactccttaaccttttcttcctcccaagctacttccaagcttcaccatcctccccacacccaagagaaaatatttcagccaccgtt-----a 26624922  T
Q  206 nnnnnnngttaacaactagatcaaaaaattggctaaaattattcttcaagatcataccatcaatcaacaggtcccaccaaaatagagtttcagtgtcatc 305  Q
           ||||||| |||||||||||||  |||||||| |||||||||||||||||||||||||| || | | ||||||||||| ||||| |||| ||||    
T  26624921 ccattttgttaacagctagatcaaaaaagcggctaaaactattcttcaagatcataccatcaatccacggatgccaccaaaataaagttttagtgccatc 26624822  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 6355702 - 6355601
Alignment:
Q  214 ttaacaactagatcaaaaaattggctaaaattattcttcaagatcataccatcaatcaacaggtcccaccaaaatagagtttcagtgtcatcttcaatct 313  Q
    |||||| ||||||||||||   |||||||| ||| |||||||||||||||||||||| || ||||||||||||||| ||||| |||| ||||| | ||||    
T  6355702 ttaacagctagatcaaaaaggcggctaaaactatgcttcaagatcataccatcaatccacgggtcccaccaaaataaagttttagtgccatctcctatct 6355603  T
Q  314 cc 315  Q
    ||    
T  6355602 cc 6355601  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 23805914 - 23805855
Alignment:
Q  19 taattataagcacttgttacattgtacttgttggaagcatgtaagtgtcaaaaccaccta 78  Q
    |||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||    
T  23805914 taattataagcactagtgacattgtaattgttggaagaatgtaagtgtcaaaaccaccta 23805855  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 10252493 - 10252444
Alignment:
Q  13 atcatgtaattataagcacttgttacattgtacttgttggaagcatgtaa 62  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  10252493 atcatataattataagcacttgttacattgtatttgttggaagcatgtaa 10252444  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 6355920 - 6355825
Alignment:
Q  12 catcatgtaattataagcacttgttacattgtacttgttggaagcatgtaagtgtcaaaaccacctacaaagactattttgctgcaaaacaatatt 107  Q
    ||||||||||| ||||||||| ||||||||| | |||||||||||||||||||  |||| |||||||    || ||||  ||||||||||||||||    
T  6355920 catcatgtaataataagcactcgttacattgaatttgttggaagcatgtaagtaccaaagccacctatcgggaatattaggctgcaaaacaatatt 6355825  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 6355783 - 6355742
Alignment:
Q  130 ctaataacctacgccgcaacttccaagcttcaccatcctccc 171  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  6355783 ctaataacctacgccgccacttccaagcttcaccatcctccc 6355742  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 47591165 - 47591220
Alignment:
Q  22 ttataagcacttgttacattgtacttgttggaagcatgtaagtgtcaaaaccacct 77  Q
    |||||||||||||| || || || ||||||||||||||||||||||||| ||||||    
T  47591165 ttataagcacttgtgacgttataattgttggaagcatgtaagtgtcaaatccacct 47591220  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 23805674 - 23805617
Alignment:
Q  238 ctaaaattattcttcaagatcataccatcaatcaacaggtcccaccaaaatagagttt 295  Q
    ||||||||| ||||||| ||||||||||||||| |||  ||||||||||||| |||||    
T  23805674 ctaaaattactcttcaatatcataccatcaatccacatatcccaccaaaataaagttt 23805617  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 23912463 - 23912413
Alignment:
Q  11 acatcatgtaattataagcacttgttacattgtacttgttggaagcatgta 61  Q
    |||||||||||||||||| |||||||||||||||| |||| ||||||||||    
T  23912463 acatcatgtaattataagtacttgttacattgtacatgttagaagcatgta 23912413  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 26676289 - 26676234
Alignment:
Q  22 ttataagcacttgttacattgtacttgttggaagcatgtaagtgtcaaaaccacct 77  Q
    |||||||||||||| ||||| || |||||||||||||||||||| |||| ||||||    
T  26676289 ttataagcacttgtgacattatagttgttggaagcatgtaagtgccaaatccacct 26676234  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 36016070 - 36016018
Alignment:
Q  10 gacatcatgtaattataagcacttgttacattgtacttgttggaagcatgtaa 62  Q
    ||||||||||| ||||||||| |||| |||||||| || ||||||||||||||    
T  36016070 gacatcatgtagttataagcaattgtaacattgtattttttggaagcatgtaa 36016018  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 33727816 - 33727762
Alignment:
Q  24 ataagcacttgttacattgtacttgttggaagcatgtaagtgtcaaaaccaccta 78  Q
    |||||||||||| |||||||| || || ||||||||||| ||||||| |||||||    
T  33727816 ataagcacttgtaacattgtagttcttcgaagcatgtaaatgtcaaatccaccta 33727762  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 30999044 - 30999104
Alignment:
Q  17 tgtaattataagcacttgttacattgtacttgttggaagcatgtaagtgtcaaaaccacct 77  Q
    |||| |||||||||||||| |||||||| || |||||||||||||| || |||||||||||    
T  30999044 tgtagttataagcacttgtaacattgtattttttggaagcatgtaaatggcaaaaccacct 30999104  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 9932806 - 9932861
Alignment:
Q  22 ttataagcacttgttacattgtacttgttggaagcatgtaagtgtcaaaaccacct 77  Q
    |||||||||||||| ||||| || |||||||||||||||||||| |||| ||||||    
T  9932806 ttataagcacttgtgacattataattgttggaagcatgtaagtgccaaatccacct 9932861  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 15728869 - 15728827
Alignment:
Q  17 tgtaattataagcacttgttacattgtacttgttggaagcatg 59  Q
    ||||||||||||||||||| ||||| || ||||||||||||||    
T  15728869 tgtaattataagcacttgtgacattataattgttggaagcatg 15728827  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 26369645 - 26369700
Alignment:
Q  22 ttataagcacttgttacattgtacttgttggaagcatgtaagtgtcaaaaccacct 77  Q
    |||||||||||||| ||||| || |||||||||||||||||||| |||| ||||||    
T  26369645 ttataagcacttgtgacattataattgttggaagcatgtaagtgccaaatccacct 26369700  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 22789268 - 22789201
Alignment:
Q  67 caaaaccacctacaaagactattttgctgcaaaacaatattgattgcgatctcacaacattccctaat 134  Q
    ||||||||||||  ||||||||| |||||||||||||||||   |   ||||||||||||||||||||    
T  22789268 caaaaccacctatcaagactattatgctgcaaaacaatattagataaaatctcacaacattccctaat 22789201  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 32574864 - 32574808
Alignment:
Q  21 attataagcacttgttacattgtacttgttggaagcatgtaagtgtcaaaaccacct 77  Q
    ||||||||||||||| ||||| || |||||||| |||||||| || |||| ||||||    
T  32574864 attataagcacttgtgacattatatttgttggatgcatgtaaatgccaaatccacct 32574808  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 13737059 - 13737108
Alignment:
Q  26 aagcacttgttacattgtacttgttggaagcatgtaagtgtcaaaaccac 75  Q
    |||||||||| |||||| | ||||||||||||||||| ||||||| ||||    
T  13737059 aagcacttgtaacattgaaattgttggaagcatgtaaatgtcaaagccac 13737108  T

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