View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6687_2D_low_20 (Length: 325)

Name: NF6687_2D_low_20
Description: NF6687_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6687_2D_low_20
NF6687_2D_low_20
[»] chr4 (1 HSPs)
chr4 (17-301)||(24727496-24727779)
[»] chr7 (1 HSPs)
chr7 (43-103)||(42419767-42419827)
[»] chr6 (1 HSPs)
chr6 (192-262)||(32367288-32367355)
[»] chr8 (1 HSPs)
chr8 (184-225)||(14179291-14179332)
[»] chr1 (1 HSPs)
chr1 (134-228)||(20731711-20731808)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 24727496 - 24727779
Alignment:
Q  17 catcaagtataacattcactttaataatcttgtttttactttgagttgagcttattttttgttaccgtttctatctctttctatgatttgaatttataat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24727496 catcaagtataacattcactttaataatcttgtttttactttgagttgagcttattttttgttaccgtttctatctctttctatgatttgaatttataat 24727595  T
Q  117 gtttcacatttttgttgaataatgagaaaaagtggaaacagaatataattgaataata--nnnnnnnnnaaagaatcaagtaaaatacattttgatgtgt 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||    
T  24727596 gtttcacatttttgttgaataatgagaaaaggtggaaacagaatataattgaataatatttttttttttaaagaatcaagtaaaatacattttgatgtgt 24727695  T
Q  215 gtgtttaaataatagtgtgtcctaatacatgtgttcaagtaagactatctccaacacttataaagtggtaggtccaagaatttttcc 301  Q
    |||||||   |||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  24727696 gtgttta---aatagtgtgtccaaatacattttttcaagtaagactatctccaacacttataaagtggtgggtcaaagaatttttcc 24727779  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 42419827 - 42419767
Alignment:
Q  43 atcttgtttttactttgagttgagcttattttttgttaccgtttctatctctttctatgat 103  Q
    |||||||||||| |||||||||||||||||| |||||| ||||  ||||||||||||||||    
T  42419827 atcttgtttttattttgagttgagcttatttgttgttatcgttggtatctctttctatgat 42419767  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 32367355 - 32367288
Alignment:
Q  192 aagtaaaatacattttgatgtgtgtgtttaaataatagtgtgtcctaatacatgtgttcaagtaagactat 262  Q
    ||||||||||||||||||||||||||||||   || ||||||||| |||||||||| | ||||||||||||    
T  32367355 aagtaaaatacattttgatgtgtgtgttta---aacagtgtgtccaaatacatgtgcttaagtaagactat 32367288  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 14179291 - 14179332
Alignment:
Q  184 aaagaatcaagtaaaatacattttgatgtgtgtgtttaaata 225  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  14179291 aaagaattaagtaaaatacattttgatgtgtgtgtttaaata 14179332  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 20731808 - 20731711
Alignment:
Q  134 aataatgagaaaaagtggaaacagaatataattgaataatannnnnnnnn-aaagaatcaagtaaaatacattttgatgtgt--gtgtttaaataata 228  Q
    ||||||||||||||||||||| |||| ||| ||||||||||          ||||||| |||||||||||||||||||||||  ||||||||||||||    
T  20731808 aataatgagaaaaagtggaaagagaaaatagttgaataatatttattttttaaagaattaagtaaaatacattttgatgtgtgtgtgtttaaataata 20731711  T

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