View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6687_2D_low_24 (Length: 302)
Name: NF6687_2D_low_24
Description: NF6687_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6687_2D_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 4976813 - 4976574
Alignment:
| Q |
18 |
gtgttaactcatattcaagagtaagatatgttgctgtcatgcttgcacttgtaagagtcacaagctgacgtctaaaacgatttcccaagaaattgatgtg |
117 |
Q |
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| T |
4976813 |
gtgttaactcatattcaagagtaagatatgttgctgtcatgcttgcacttgtaagagtcacaagctgacgtctaaaactatttcccaagaaattgatgtg |
4976714 |
T |
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| Q |
118 |
gcatgtgaagccattaagtttttaatcaagtgtatgtttggtaattataattgtatgcccgaaacacgatggcccactttgattttagtagatcgctgta |
217 |
Q |
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| T |
4976713 |
gcatgtgaagccattaagtttttaatc-------tgtttggtaattata-------gtcagaatcacgatggtccactttaattttagtagatcgctgta |
4976628 |
T |
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| Q |
218 |
attttaacatattca-cccgatactaa--atatgataagtgttttgaaaaaaca |
268 |
Q |
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| T |
4976627 |
attttaacatactcatcgcgatatcaaatatatgataagtgttttgaaaaaaca |
4976574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 4994720 - 4994481
Alignment:
| Q |
18 |
gtgttaactcatattcaagagtaagatatgttgctgtcatgcttgcacttgtaagagtcacaagctgacgtctaaaacgatttcccaagaaattgatgtg |
117 |
Q |
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| T |
4994720 |
gtgttaactcatattcaagagtaagatatgttgctgtcatgcttgcacttgtaagagtcacaagctgacgtctaaaactatttcccaagaaattgatgtg |
4994621 |
T |
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| Q |
118 |
gcatgtgaagccattaagtttttaatcaagtgtatgtttggtaattataattgtatgcccgaaacacgatggcccactttgattttagtagatcgctgta |
217 |
Q |
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| T |
4994620 |
gcatgtgaagccattaagtttttaatc-------tgtttggtaattata-------gtcagaatcacgatggtccactttaattttagtagatcgctgta |
4994535 |
T |
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| Q |
218 |
attttaacatattca-cccgatactaa--atatgataagtgttttgaaaaaaca |
268 |
Q |
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| T |
4994534 |
attttaacatactcatcgcgatatcaaatatatgataagtgttttgaaaaaaca |
4994481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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