View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6687_2D_low_27 (Length: 293)
Name: NF6687_2D_low_27
Description: NF6687_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6687_2D_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 49683635 - 49683369
Alignment:
| Q |
11 |
ttgaaggagaggacaaaaagggtttgggtggtatttctagcacttgaaggctcccttctagcatttccaccactttattcattgttggtcgatgtgaagg |
110 |
Q |
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| T |
49683635 |
ttgaaggagaggacaaaaagggtttgggtggtatttctagcacttgaaggctcccttctagcatttccaccactttattcattgctggtcgatgtgaagg |
49683536 |
T |
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| Q |
111 |
gtcggtttgtaagcaccataaactcaccattgtcatctttcttaccatttcttcatcaattatttcatttttaatacacttgagtccaagatcttgattc |
210 |
Q |
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| T |
49683535 |
gtcggttggtatgcaccataaactcaccattgtcatctttcttaccatctcttcatca---atttcatttttaatacacttgagtccaagatcttgattc |
49683439 |
T |
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| Q |
211 |
aattcaagacgcttgtagatccaatgtggaaaatataactcgctagaacaatccacttcaactttgatgt |
280 |
Q |
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| T |
49683438 |
aattcaagacgcttgtagatccaatgtggaaaatataactcgctagaacaatccacttcaactttgatgt |
49683369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 49688532 - 49688268
Alignment:
| Q |
13 |
gaaggagaggacaaaaagggtttgggtggtatttctagcacttgaaggctcccttctagcatttccaccactttattcattgttggtcgatgtgaagggt |
112 |
Q |
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| T |
49688532 |
gaaggagaagacaaaaagggtttgggtggtatttccagcacttcaaggctcccttccagcatttccaccactttatgcattgcttgtcggtgtgaaggat |
49688433 |
T |
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| Q |
113 |
cggtttgtaagcaccataaactcaccattgtcatctttcttaccatttcttcatcaattatttcatttttaatacacttgagtccaagatcttgattcaa |
212 |
Q |
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| T |
49688432 |
cggtttgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatca---ttttcatttttaatagacttgagtccaagatcttgattcaa |
49688336 |
T |
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| Q |
213 |
ttcaagacgcttgtagatccaatgtggaaaatataactcgctagaacaatccacttcaactttgatgt |
280 |
Q |
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| T |
49688335 |
ttcaagacgcttgtaaatccaatgtggaaaatataaatcgctagaacaatccacttcaactttgatgt |
49688268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 49711247 - 49710987
Alignment:
| Q |
9 |
tgttgaaggagaggacaaaaagggtttgggtggtatttctagcacttgaaggctcccttctagcatttccaccactttattcattgttggtcgatgtgaa |
108 |
Q |
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| T |
49711247 |
tgttgaaggagaagacaaaaagggtttgggtggtatttccagcatttgaagactcccttccagcatttccaccactttatgcattgctggtcgatgagaa |
49711148 |
T |
|
| Q |
109 |
gggtcggtttgtaagcaccataaactcaccattgtcatctttcttaccatttcttcatcaattatttcatttttaatacacttgagtccaagatcttgat |
208 |
Q |
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| T |
49711147 |
gggtcggtttgtatgcaccataaactcaccactgacatttttctgaccatttcttcatca---ttttcatttttaatactcttgagtccaagatcctgat |
49711051 |
T |
|
| Q |
209 |
tcaattcaagacgcttgtagatccaatgtggaaaatataactcgctagaacaatccacttcaac |
272 |
Q |
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| T |
49711050 |
tcaattcaagacgcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaac |
49710987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 49714887 - 49714627
Alignment:
| Q |
9 |
tgttgaaggagaggacaaaaagggtttgggtggtatttctagcacttgaaggctcccttctagcatttccaccactttattcattgttggtcgatgtgaa |
108 |
Q |
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| T |
49714887 |
tgttgaaggagacgacaaaaagggtttgggtggtatttccagcacttgaaggctcccttccaacatttccaccactttatgcattcctggtcgatgcgaa |
49714788 |
T |
|
| Q |
109 |
gggtcggtttgtaagcaccataaactcaccattgtcatctttcttaccatttcttcatcaattatttcatttttaatacacttgagtccaagatcttgat |
208 |
Q |
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||||| ||| ||| ||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| | ||| ||||||| |||| |
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| T |
49714787 |
gggtcagttcgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatca---atttcatttttaatacacctcagttcaagatcctgat |
49714691 |
T |
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| Q |
209 |
tcaattcaagacgcttgtagatccaatgtggaaaatataactcgctagaacaatccacttcaac |
272 |
Q |
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| T |
49714690 |
tcaattcaagacgcttgtaaatccagtgtggaaaatataactcgctggaacaatcaacttcaac |
49714627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 49215902 - 49215663
Alignment:
| Q |
9 |
tgttgaaggagaggacaaaaagggtttgggtggtatttctagcacttgaaggctcccttctagcatttccaccactttattcattgttggtcgatgtgaa |
108 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||| |||||||| || |
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| T |
49215902 |
tgttgaaggagaagacaaaaagggtttgggtggtatttcaagcacttgaaggctcccttccaacatttccaccactttatgcattgctggtcgattcaaa |
49215803 |
T |
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| Q |
109 |
gggtcggtttgtaagcaccataaactcaccattgtcatctttcttaccatttcttcatcaattatttcatttttaatacacttgagtccaagatcttgat |
208 |
Q |
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| T |
49215802 |
gggtctgtttgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatca---atttcatttttaatacacctgagtccaagatcctgat |
49215706 |
T |
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| Q |
209 |
tcaattcaagacgcttgtagatccaatgtggaaaatataactc |
251 |
Q |
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| T |
49215705 |
tcaattcaagacgcttgtaaatccagtgtggaaaatattactc |
49215663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 49725657 - 49725501
Alignment:
| Q |
15 |
aggagaggacaaaaagggtttgggtggtatttctagcacttgaaggctcccttctagcatttccaccactttattcattgttggtcgatgtgaagggtcg |
114 |
Q |
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|||||| |||||||||||||| ||||| |||| | || | || || ||||||||||| |||||||||||| | || |||||| |||||||| | |
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| T |
49725657 |
aggagatgacaaaaagggtttaggtggcatttgcaacaactcaactctaccttctagcatctccaccactttacttatatccggtcgagttgaagggttg |
49725558 |
T |
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| Q |
115 |
gtttgtaagcaccataaactcaccattgtcatctttcttaccatttcttcatcaatt |
171 |
Q |
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||||||| |||||||| | ||| |||||||||||||| ||| |||| ||||||||| |
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| T |
49725557 |
gtttgtatgcaccatagagccactattgtcatctttctcaccttttcgtcatcaatt |
49725501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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