View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6687_2D_low_31 (Length: 268)
Name: NF6687_2D_low_31
Description: NF6687_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6687_2D_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 157
Target Start/End: Complemental strand, 36605905 - 36605754
Alignment:
| Q |
6 |
cgactgatatgaatctcaatcaaatagtggaacatcattttgattctacaatctattagttttcattcctcaaattttcccccatttgcctatattaatt |
105 |
Q |
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| T |
36605905 |
cgactgaactgaatctcaatcaaatagtaaaacatcattttgattctacaatctattagttttcattcctcaaattttcccccatttgcctatattaatt |
36605806 |
T |
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| Q |
106 |
tactctattcaattcccaatatatatgtattttaactacctatattaacatg |
157 |
Q |
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| T |
36605805 |
tactctattcaatttacagtatatatgtattttaactacctacattaacatg |
36605754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 32649640 - 32649746
Alignment:
| Q |
15 |
tgaatctcaatcaaatagtggaacatcattttgattctacaatctattagttttcattcctcaaa-ttttcccccatttgcctatattaatttactctat |
113 |
Q |
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| T |
32649640 |
tgaatgtcaatcaaacag-ggaacataattttcattctataatctattagttttcattcctcaaatttttcccacatttgcctatattaattaactctct |
32649738 |
T |
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| Q |
114 |
tcaattcc |
121 |
Q |
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| T |
32649739 |
tccattcc |
32649746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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