View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6687_2D_low_33 (Length: 267)
Name: NF6687_2D_low_33
Description: NF6687_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6687_2D_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 35786559 - 35786815
Alignment:
| Q |
1 |
acattttgtgcatgttgttcttgatcatgatgatgactactatgaatattctgaccgtacgaggtaattgatttaacagaatcaccacttgcttgttcaa |
100 |
Q |
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| T |
35786559 |
acattttgtgcatgttgttcttgatcatgatgatgactactatgaatattctgaccgtacgaagtaattgatttaacagaatcaccacttgcatgttcaa |
35786658 |
T |
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| Q |
101 |
aatcttgatttagttgttgatgatgatattgttgatggtgttgcacttgcacttgcaccatttcttgatgagggttatgatgaaaatgaactaaaccatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35786659 |
aatcttgatttagttgttgatgatgatattgttgatgctgttgcacttgcacttgcaccatttcttgatgagggttatgatgaaaatgaactaaaccatt |
35786758 |
T |
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| Q |
201 |
attgttattatagaaaactggttggtgatgatgatgaaaattattgtaaacaccaaa |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35786759 |
attgttattatagaaaactggttggtgatgatgatgaaaattattgtaaacaccaaa |
35786815 |
T |
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