View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6687_2D_low_44 (Length: 204)
Name: NF6687_2D_low_44
Description: NF6687_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6687_2D_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 22121673 - 22121492
Alignment:
| Q |
14 |
tatcccaaatgaaatgcctaattaaatattttggattatttacttttatattttcttttctacatgttgtgttattgacttaattgctgtattgatgatt |
113 |
Q |
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| T |
22121673 |
tatctcaaatgaaatgcctaattaaatattttggattatttacttttatattttcttttctacatgttgtgttattgacttaattgctgtattgatgatt |
22121574 |
T |
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| Q |
114 |
ccagagcgtatgataaggctgctataaaatgcaatggaagggaagcagttacaaattttgaggctagttcttatgaaggaga |
195 |
Q |
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| T |
22121573 |
ccagagcgtatgataaggctgctataaaatgcaatggaagggaagcagttacaaattttgaggctagttcttatgaaggaga |
22121492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 40512800 - 40512981
Alignment:
| Q |
14 |
tatcccaaatgaaatgcctaattaaatattttggattatttacttttatattttcttttctacatgttgtgttattgacttaattgctgtattgatgatt |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512800 |
tatctcaaatgaaatgcctaattaaatattttggattatttacttttatattttcttttctacatgttgtgttattgacttaattgctgtattgatgatt |
40512899 |
T |
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| Q |
114 |
ccagagcgtatgataaggctgctataaaatgcaatggaagggaagcagttacaaattttgaggctagttcttatgaaggaga |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512900 |
ccagagcgtatgataaggctgctataaaatgcaatggaagggaagcagttacaaattttgaggctagttcttatgaaggaga |
40512981 |
T |
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