View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6687_2D_low_8 (Length: 502)
Name: NF6687_2D_low_8
Description: NF6687_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6687_2D_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 5 - 485
Target Start/End: Original strand, 43243844 - 43244324
Alignment:
| Q |
5 |
gagatggttactcttttatgggaaaccaaacaaatttcattggtggatttggacaatacccaattggtgatattggtaggtttgactcagaacaattcgc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43243844 |
gagatggttactcttttatgggaaaccaaacaaatttcattggtggatttggacaatacccaattggtgatattggtaggtttgactcagaacaattcgc |
43243943 |
T |
|
| Q |
105 |
accaaggttttcaagtaataatgtttcactcactcttggtcttgattcaatacaaggaaatcatcaaacatttctaccaaaccaaaacattcaactagga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43243944 |
accaaggttttcaagtaataatgtttcactcactcttggtcttgattcaatacaaggaaatcatcaaacatttctaccaaaccaaaacattcaactagga |
43244043 |
T |
|
| Q |
205 |
agaagcattgatataagtgaaccaaatgaatttggttctataaacacttcctctcctcaatatgaaagtatcaacatgcaaaacccaaaaaggtttgctg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43244044 |
agaagcattgatataagtgaaccaaatgaatttggttctataaacacttcctctcctcaatatgaaagtatcaacatgcaaaacccaaaaaggtttgctg |
43244143 |
T |
|
| Q |
305 |
cacagttgttaccagattttgtgtcctaaataataatacattgaagggtgaacaatgtggttgctgaaatttctttcatcttatcacactctctcatgaa |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43244144 |
cacagttgttaccagattttgtgtcctaaataataatacattgaagggtgaacaatgtggttgctgaaatttctttcatcttatcacactctctcatgaa |
43244243 |
T |
|
| Q |
405 |
agggagtattgaaaaattgtagtgtaaagagaaagaaagatttttacattagtataggtttatactctacatagaaccatt |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43244244 |
agggagtattgaaaaattgtagtgtaaagagaaagaaggatttttacattagtataggtttatactctacatagaaccatt |
43244324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 25420229 - 25420374
Alignment:
| Q |
5 |
gagatggttactcttttatgggaaaccaaacaaatttcattggtggatttggacaatacccaattggtgatattggtaggtttgactcagaacaattcgc |
104 |
Q |
| |
|
|||||||||| | ||| |||||||||||||| |||||||||| ||| || || ||||| ||||| | || || || || ||||| | |||||||| || |
|
|
| T |
25420229 |
gagatggttattgtttcatgggaaaccaaactaatttcattgctggtttcggtcaatatccaatggaggaaatcggaagatttgatgcggaacaatttgc |
25420328 |
T |
|
| Q |
105 |
accaaggttttcaagtaataa------tgtttcactcactcttggt |
144 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
25420329 |
accaaggttttcaggtaataataatggtgtttcactcactcttggt |
25420374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 337
Target Start/End: Original strand, 25420501 - 25420567
Alignment:
| Q |
271 |
agtatcaacatgcaaaacccaaaaaggtttgctgcacagttgttaccagattttgtgtcctaaataa |
337 |
Q |
| |
|
|||||||||||||| || ||||| |||||||| ||||| ||||| || ||||||||| | ||||||| |
|
|
| T |
25420501 |
agtatcaacatgcagaatccaaagaggtttgccgcacaattgttgccggattttgtggcataaataa |
25420567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 209
Target Start/End: Original strand, 25420420 - 25420448
Alignment:
| Q |
181 |
ccaaaccaaaacattcaactaggaagaag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25420420 |
ccaaaccaaaacattcaactaggaagaag |
25420448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University