View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6687_high_2 (Length: 414)
Name: NF6687_high_2
Description: NF6687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6687_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 12546853 - 12547147
Alignment:
| Q |
16 |
tcatcacaatacaagaaaataaaa-gataaattctaaatacttttattcttatcccttttaaggttctaacagtagagagtggcaacttgtgacagctat |
114 |
Q |
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| T |
12546853 |
tcatcacaatacaagaaaataaaaagataaattctaaatacttttattcttatcccttttaaggttctaacggtagagagtgacaacttgtgacagctat |
12546952 |
T |
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| Q |
115 |
tgaaatttgtcctcttcttaggatgcttctagagactattcctagtccatgagtctgttgggcaatttgattgctctctttggtcttccttctggcccac |
214 |
Q |
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| T |
12546953 |
tgaaatttgtcctcttcttaggatgcttctagagactattcctagtccatgagtctgttgggcaatttaatttctctctttggtcttccttctggcccac |
12547052 |
T |
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| Q |
215 |
catttgcattcttgttcactattatttggctgttttcttcctttgacttggtcttctttgtttttgtgatattgggatccatttgctttgtaaca |
309 |
Q |
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| T |
12547053 |
catttgcattcttgttcactattatttggatgttttcttcctttgacttggtcttctttgtttttgtgatattgggatccatttgctttgtaaca |
12547147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 12143984 - 12144257
Alignment:
| Q |
16 |
tcatcacaatacaagaaaataaaa-gataaattctaaatacttttattcttatcccttttaaggttctaacagtagagagtggcaacttgtgacagctat |
114 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
12143984 |
tcatcacaatacaagaaaataaaaagataaattctaaatacttttattcttatcccttttaaggttctaacggtagagagtgacaacttgtgacagctat |
12144083 |
T |
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| Q |
115 |
tgaaatttgtcctcttcttaggatgcttctagagactattcctagtccatgagtctgttgggcaatttgattgctctctttggtcttccttctggcccac |
214 |
Q |
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| T |
12144084 |
tgaaatttgtcctcttcttaggatgcttctagagactattcctagtccatgagtctgttgggcaatttaatttctctctttggtcttccttctggcccac |
12144183 |
T |
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| Q |
215 |
catttgcattcttgttcactattatttggctgttttcttcctttgacttggtcttctttgtttttgtgatattg |
288 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12144184 |
catttgcattcttgttcactattatttggatgttttcttcctttgacttggtcttctttgtttttgtgatattg |
12144257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 12143860 - 12143929
Alignment:
| Q |
16 |
tcatcacaatacaagaaaataaaa-gataaattctaaatacttttattcttatcccttttaaggttctaa |
84 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12143860 |
tcatcacaatacaagaaaataaaaagataaattctaaatacttttattcttatcccttttaaggttctaa |
12143929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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