View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6687_low_1 (Length: 573)
Name: NF6687_low_1
Description: NF6687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6687_low_1 |
 | |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-144; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 254 - 553
Target Start/End: Original strand, 26226083 - 26226381
Alignment:
| Q |
254 |
ctaatcctaccagatttggagctcactgatgatcaaattaagaacttaactctgacattaattgaaaagcacatggagaagaatataagatctttaaagg |
353 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26226083 |
ctaatcctaccagatttggagctcaccgatgatcaaattaagaacttaactctgacattaattgaaaagcacatggagaagaatagaagatctttaaagg |
26226182 |
T |
|
| Q |
354 |
aatttaaaggatttccatacccaacaaattatgtcatggaagagcttggtaacagattgatttatgatgagcttaactatgatgaagatgcattgaagtt |
453 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26226183 |
aatttaaaggatttccatacccaacagattatgtgatggaagagcttggtaacagattgatttatgatgagcttaactatgatgaagatgcattgaagtt |
26226282 |
T |
|
| Q |
454 |
ggaattcaaaagactattcagtactctaacaggtaaagtgcaaatacattgatcttatttcgattatttctaactatcaattcatagctttaatatatat |
553 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
26226283 |
ggaattcaaaagactattcagtactgtaacaggtaaagtgcaaatacattggtgttatttcga-tatttctaactatcaattcatagatttaatatatat |
26226381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 254 - 553
Target Start/End: Original strand, 33545649 - 33545947
Alignment:
| Q |
254 |
ctaatcctaccagatttggagctcactgatgatcaaattaagaacttaactctgacattaattgaaaagcacatggagaagaatataagatctttaaagg |
353 |
Q |
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|
||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33545649 |
ctaatcctaccagatttggagctaaccgatgatcaaattaagaacttaactctaacattaattgaaaagcacatggagaagaatagaagatctttaaagg |
33545748 |
T |
|
| Q |
354 |
aatttaaaggatttccatacccaacaaattatgtcatggaagagcttggtaacagattgatttatgatgagcttaactatgatgaagatgcattgaagtt |
453 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33545749 |
aatttaaaggatttccatacccaacagattatgtcatggaagagcttggtaacagattgatttatgatgagcttaactatgatgaagatgcattgaagtt |
33545848 |
T |
|
| Q |
454 |
ggaattcaaaagactattcagtactctaacaggtaaagtgcaaatacattgatcttatttcgattatttctaactatcaattcatagctttaatatatat |
553 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
33545849 |
ggaattcaaaagactattcagtactgtaacaggtaaagtgcaaatacattggtgttatttcga-tatttctaactatcaattcatagatttaatatatat |
33545947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 26225842 - 26226033
Alignment:
| Q |
13 |
aatatatagaagcaataaaggaaatgagtgtttgggcaaccagtgttttcataagaatactatttgtaactctgctacttaccgcgactatggacaggcc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26225842 |
aatatatagaagcaataaaggaaatgagtgtttgggcaaccggtgttttcataagaatactatttgtaactctgctacttaccgcgactatggacaggcc |
26225941 |
T |
|
| Q |
113 |
agttcatgtttggaataacacgtggaagtagttaagtgatggtgttctatacgagcaaagacgagtggctaataacagaggtaaaatgctac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| |
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| T |
26225942 |
ggttcatgtttggaataacacgtggaagtggttaagcgatggtgttctatacgaacaaagacgagtggctaataacagaggtataattctac |
26226033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 33545408 - 33545599
Alignment:
| Q |
13 |
aatatatagaagcaataaaggaaatgagtgtttgggcaaccagtgttttcataagaatactatttgtaactctgctacttaccgcgactatggacaggcc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33545408 |
aatatatagaagcaataaaggaaatgagtgtttgggcaaccggtgttttcataagaatactatttgtaactctgctacttaccgcgactatggacaggcc |
33545507 |
T |
|
| Q |
113 |
agttcatgtttggaataacacgtggaagtagttaagtgatggtgttctatacgagcaaagacgagtggctaataacagaggtaaaatgctac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| |
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| T |
33545508 |
ggttcatgtttggaataacacgtggaagtggttaagcgatggtgttctatacgaacaaagacgagtggctaataacagaggtataattctac |
33545599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 254 - 553
Target Start/End: Complemental strand, 23967216 - 23966917
Alignment:
| Q |
254 |
ctaatcctaccagatttggagctcactgatgatcaaattaagaacttaactctgacattaattgaaaagcacatggagaagaatataagatctttaaagg |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23967216 |
ctaatcctaccagatttggagctcactgatgatcaaattaataacttaactctgacattaattgaaaagcacatggagaagaatagaagatctttaaagg |
23967117 |
T |
|
| Q |
354 |
aatttaaaggatttccatacccaacaaattatgtcatggaagagcttggtaacagattgatttatgatgagcttaactatgatgaagatgcattgaagtt |
453 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
23967116 |
aatttaaaggatttgcatacccaacagattatgtcatggaagagcttggtaacaaattgatttatgatgagcttaactatgatgaagatgtgttgaagtt |
23967017 |
T |
|
| Q |
454 |
ggaattcaaaagactattcagtactctaacaggtaaagtgcaaatacattgatcttatttcgattatttctaactatcaattcatagctttaatatatat |
553 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23967016 |
tgaattcaaaagactattcagtactctaacaggtaaagtgcaaatacattagtgttatttcgattatttctaactatcaattcatagctttaatatatat |
23966917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 23967457 - 23967275
Alignment:
| Q |
13 |
aatatatagaagcaataaaggaaatgagtgtttgggcaaccagtgttttcataagaatactatttgtaactctgctacttaccgcgactatggacaggcc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
23967457 |
aatatatagaagcaataaaggaaatgagtgtttgggcaaccgttgttttcataagaatactatttgtaactctgctacttaccgcgacaatggacatgcc |
23967358 |
T |
|
| Q |
113 |
agttcatgtttggaataacacgtggaagtagttaagtgatggtgttctatacgagcaaagacgagtggctaataacagaggta |
195 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
23967357 |
agttcatgtttgtaataacacgtggaagtagttaagcgatggtgttctatacgaacaaagatgagtggctaataacagaggta |
23967275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 254 - 553
Target Start/End: Original strand, 128355 - 128643
Alignment:
| Q |
254 |
ctaatcctaccagatttggagctcactgatgatcaaattaagaacttaactctgacattaattgaaaagcacatggagaagaatataagatctttaaagg |
353 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
128355 |
ctaatcctaccagatttgtagctcactgatgatcaaattaagaacttaactctgacattaattgaaaagcacatggagaagaatagaagatcttta---- |
128450 |
T |
|
| Q |
354 |
aatttaaaggatttccatacccaacaaattatgtcatggaagagcttggtaacagattgatttatgatgagcttaactatgatgaagatgcattgaagtt |
453 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
128451 |
------aaggatttccatacccaacagattatgtcacggaagagcttggtaacaaattgatttatgatgagcttaactatgatgaagatgcattgaagtt |
128544 |
T |
|
| Q |
454 |
ggaattcaaaagactattcagtactctaacaggtaaagtgcaaatacattgatcttatttcgattatttctaactatcaattcatagctttaatatatat |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
128545 |
ggaattcaaaagactattcagtactctaacaggtaaagtgcaaatacattggtgttatttcga-tatttctaactatcaattcatagatttaatatatat |
128643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 128114 - 128305
Alignment:
| Q |
13 |
aatatatagaagcaataaaggaaatgagtgtttgggcaaccagtgttttcataagaatactatttgtaactctgctacttaccgcgactatggacaggcc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
128114 |
aatatatagaagcaataaaggaaatgagtgtttgggcaaccggtgttttcataagaatactatttgtaactctgctacttaccgctactatggacaggcc |
128213 |
T |
|
| Q |
113 |
agttcatgtttggaataacacgtggaagtagttaagtgatggtgttctatacgagcaaagacgagtggctaataacagaggtaaaatgctac |
204 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
128214 |
gtttcatgtttggaataacacgtggaagtggttaagcgatggtgttctatacgaacaaagacgagtggctaataacagaggtataattctac |
128305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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