View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6687_low_3 (Length: 357)
Name: NF6687_low_3
Description: NF6687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6687_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 13261601 - 13261939
Alignment:
| Q |
1 |
atcttcaacaactctaaagccacgatcttccccttattcgactccggatccgcagacgcctccttcggcggtgtcttcattgacaatttacaaagtgctc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13261601 |
atcttcaacaactctaaagccacaatcttccccttattcgactccggatccgcagacgcctccttcggcggtgtcttcattgacaatttacaaagtgctc |
13261700 |
T |
|
| Q |
101 |
taaacaccaaaaaagcatccctcctcaacttattcccaatctgaacttccaaatcatcatccctctcaaccaactccccgtcaactaactcccctttcct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13261701 |
taaacaccaaaaaagcatccctcctcaacttattcccaatctgaacttccaaatcatcatccctctcaatcaactccccgtcaactaactcccctttcct |
13261800 |
T |
|
| Q |
201 |
cccctccaacgccgtcttatacatactaatctcccaatacttcgcatccaacatatccttatcagtagaatccaacaagtcagtaggattcgtcgtctcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
13261801 |
cccctccaacgccgtcttatacatactaatctcccaatacttcgcatccaacatatccttatcagtagaatccaacaaatcagtaggattcgttgtctcc |
13261900 |
T |
|
| Q |
301 |
actgtcgtcgtctcaaacgcaccgtcatgtccacctaac |
339 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13261901 |
actgtcgtcgtctcaaatgcaccgtcatgtccacctaac |
13261939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 4 - 307
Target Start/End: Complemental strand, 28134527 - 28134221
Alignment:
| Q |
4 |
ttcaacaactctaaagccacgatcttccccttattcgactccggatccgcagacgcctccttcggcggtgtcttcattgacaatttacaaagtgctctaa |
103 |
Q |
| |
|
||||||||||| || ||||| |||||||| | |||||| ||||| || || | |||||| | ||| | |||||| ||||||||||||||||| |||| |
|
|
| T |
28134527 |
ttcaacaactccaacgccacaatcttccctctcatcgactgtggatcagcggaggtctccttagacggcgacttcatagacaatttacaaagtgccctaa |
28134428 |
T |
|
| Q |
104 |
acaccaaaaaagcatccctcctcaacttattcccaatctgaacttccaaatcatcatccctctca---accaactccccgtcaactaactcccctttcct |
200 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| |||| |||||| || || |||||||||||||| |
|
|
| T |
28134427 |
acaccaaaaaagcatctctcctcagcttattcccaatctgaatctccaaatcatcatccctctcctccaccacctccccatccaccaactcccctttcct |
28134328 |
T |
|
| Q |
201 |
cccctccaacgccgtcttatacatactaatctcccaatacttcgcatccaacatatccttatcagtagaatccaacaagtcagtaggattcgtcgtctcc |
300 |
Q |
| |
|
||| ||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| || | |||||| || |||||| |
|
|
| T |
28134327 |
cccttccaaagccgacttatacatgctaatctcccaatactttgcatccaacatatccttatcggtcgaatccaacaaatctgcaggattggtagtctcc |
28134228 |
T |
|
| Q |
301 |
actgtcg |
307 |
Q |
| |
|
||||||| |
|
|
| T |
28134227 |
actgtcg |
28134221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University