View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6687_low_6 (Length: 238)
Name: NF6687_low_6
Description: NF6687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6687_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 38985435 - 38985216
Alignment:
| Q |
1 |
ttgatttttactagtttttcttcacacatcataatattagtgtaagtttaatcaaattcacaagaatcggcatccactatgtggcaataagaataaaaca |
100 |
Q |
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| T |
38985435 |
ttgatttttactagtttttcttcacacatcatagtattagtgtgaatttaatcaaattcacaagaatcggcatccactatgtggcaataagaacaaaaca |
38985336 |
T |
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| Q |
101 |
ttaagtaagtaccatggatactaactgtgatattgaaaatttaccagagacaacaattttgcgttatggaaggtaaatatacaaataatcttgattaaac |
200 |
Q |
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| T |
38985335 |
ttaagtaagtaccatggatactaattgtgatattgaaaatttacaagagacaacaattttgggttatgaaagataaatataccagtaatattgattaaac |
38985236 |
T |
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| Q |
201 |
aaaagtgtgtagaagtcatg |
220 |
Q |
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| T |
38985235 |
aaaagtgtgtagaagtcatg |
38985216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 38984489 - 38984410
Alignment:
| Q |
129 |
gatattgaaaatttaccagagacaacaattttgcgttatggaaggtaaatatacaaataatcttgattaaacaaaagtgt |
208 |
Q |
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| T |
38984489 |
gatattgcaaatttactagagacaacaattttgggttatgaaaggtaaatatacaagcaatcttgattaaacaaaagtgt |
38984410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 36378850 - 36378890
Alignment:
| Q |
140 |
tttaccagagacaacaattttgcgttatggaaggtaaatat |
180 |
Q |
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| T |
36378850 |
tttaccagagataacaattttgggttatggaaggtaaatat |
36378890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 38984583 - 38984492
Alignment:
| Q |
15 |
tttttcttcacacatcataatattagtgtaagtttaatcaaattcacaagaatcggcatccactatgtggcaataagaataaaacattaagt |
106 |
Q |
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| T |
38984583 |
tttttcttcactcatcatagtattggtgtgaagttaatcaaattcacaataattgacatctactgtgggaaaataagaacaaaacattaagt |
38984492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 3394876 - 3394950
Alignment:
| Q |
107 |
aagtaccatggatactaactgtgatattga-aaatttaccagagacaacaattttgcgttatggaaggtaaatat |
180 |
Q |
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| T |
3394876 |
aagtaccatgggttcaaagtgggatattgagaaatttaccggagataacaattttgggttatggaaggtaaatat |
3394950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 18199364 - 18199296
Alignment:
| Q |
147 |
gagacaacaattttgcgttatggaaggtaaatatacaaataatcttgattaaacaaaagtgtgtagaag |
215 |
Q |
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| T |
18199364 |
gagacaacgattttggattatggaaggtaaatatgcaagcagtcttgattcaacaaaagtgtgcagaag |
18199296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 14419002 - 14418925
Alignment:
| Q |
101 |
ttaagtaagtaccatggatactaactgtgatattgaaaa-tttaccagagacaacaattttgcgttatggaaggtaaa |
177 |
Q |
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|||| |||||||||||| | |||| || |||||||| || |||||| |||| ||| |||||| ||||||||||||||| |
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| T |
14419002 |
ttaattaagtaccatgggttctaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa |
14418925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 20297847 - 20297919
Alignment:
| Q |
106 |
taagtaccatggatactaactgtgatattgaaaa-tttaccagagacaacaattttgcgttatggaaggtaaa |
177 |
Q |
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| T |
20297847 |
taagtaccatgggttcaaagtgggatattgagaagtttaccagagataacgattttgggttatggaaggtaaa |
20297919 |
T |
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