View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6687_low_8 (Length: 219)
Name: NF6687_low_8
Description: NF6687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6687_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 45543259 - 45543078
Alignment:
| Q |
17 |
agatgaagttgaagtaatctcttctggaacaaaagttgataaaactctccctcttgaaaataaaaatgatgaaacttctaagcttggtaatgatggaact |
116 |
Q |
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| T |
45543259 |
agatgaagttgaagtaatctcttctggaacaaaagttgataaaactctccctcttgaaaataaaaatgatgaaacttctaagctcagtaatgatggaact |
45543160 |
T |
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| Q |
117 |
agcattggtagtaatgagggaactgaaacaaaaaatggagacaaaggggcttctgtgaaggactatttggctgagaagctaa |
198 |
Q |
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| T |
45543159 |
agcattggtagtaatgagggaactgaaacaaaaaatggagacaaaggggcttctgtgaaggactatctggctgagaagctaa |
45543078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 45543790 - 45543672
Alignment:
| Q |
17 |
agatgaagttgaagtaatctcttctggaacaaaagttgataaaactctccctcttgaaaataaaaatgatgaaacttctaagcttggtaatgatggaact |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| ||| |
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| T |
45543790 |
agatgaagttgatgtaatctcttctggaacaaaagttgataaaactctcccttttg------aaaatgatgaaacttctaagctcagtaatgatggtact |
45543697 |
T |
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| Q |
117 |
agcattggtagtaatgagggaactg |
141 |
Q |
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| T |
45543696 |
agcactggtagtaatgagggaactg |
45543672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 45530260 - 45530187
Alignment:
| Q |
125 |
tagtaatgagggaactgaaacaaaaaatggagacaaaggggcttctgtgaaggactatttggctgagaagctaa |
198 |
Q |
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| T |
45530260 |
tagtaatgagggaactgaaacaaaaaatcgagataaaggggctactgtgaaagactatttggctgagaagctaa |
45530187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 45548470 - 45548400
Alignment:
| Q |
128 |
taatgagggaactgaaacaaaaaatggagacaaaggggcttctgtgaaggactatttggctgagaagctaa |
198 |
Q |
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|||||| |||||||||||||||||||| |||||||||| |||||||||| || ||||| |||||||||| |
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| T |
45548470 |
taatgacggaactgaaacaaaaaatggggacaaaggggtcactgtgaaggattacttggccgagaagctaa |
45548400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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