View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6689_2D_low_8 (Length: 249)
Name: NF6689_2D_low_8
Description: NF6689_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6689_2D_low_8 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 118044 - 118260
Alignment:
| Q |
15 |
tttggtgttcctgtccaacagtataagttataattaatatgattatagatgaaatgattatgtaaagagttaattgacgtaaggtttgaaaaatatgtac |
114 |
Q |
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| T |
118044 |
tttggtgttcttgtccaacagtataaattataattaatatgattatagatgaaatgattatgtaaagagttaattgacgtaaggtttgaaaaatatgtac |
118143 |
T |
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| Q |
115 |
ccgaatcctctaattctgttttgtatctcattctcagtgtcatatatgtaaagttgggcatactttggttgttctccttcaattggtaacatgctaccaa |
214 |
Q |
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| T |
118144 |
ccgaatcctctaattctgttttgtatctcattctcagtgtcatatatgtaaagttgggcatactttggttgttctccttcaattggtaacatgctaccaa |
118243 |
T |
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| Q |
215 |
ttctatgacatgtctgt |
231 |
Q |
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| T |
118244 |
ttctatgacatgtctgt |
118260 |
T |
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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 22072085 - 22072171
Alignment:
| Q |
105 |
aaatatgtacccgaatcctctaattctgttttgtatctcattctcagtgtcatatatgtaaagttgggcatactttggttgttctcc |
191 |
Q |
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| T |
22072085 |
aaatatatactcgaatcctttaattttgttctgtatctcattctctgtgtcatatatgtaaagttgagcatatttaggtagttctcc |
22072171 |
T |
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