View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6689_high_2 (Length: 436)

Name: NF6689_high_2
Description: NF6689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6689_high_2
NF6689_high_2
[»] chr6 (13 HSPs)
chr6 (99-365)||(33019450-33019714)
chr6 (97-366)||(5086428-5086695)
chr6 (118-247)||(503957-504086)
chr6 (118-247)||(8263831-8263960)
chr6 (19-105)||(24882755-24882841)
chr6 (118-247)||(19227099-19227228)
chr6 (118-247)||(33639503-33639632)
chr6 (376-426)||(24882719-24882769)
chr6 (309-366)||(15644225-15644282)
chr6 (300-366)||(504121-504187)
chr6 (195-247)||(1334793-1334845)
chr6 (316-366)||(19226998-19227048)
chr6 (128-238)||(17874237-17874347)
[»] chr1 (10 HSPs)
chr1 (103-366)||(7178354-7178615)
chr1 (118-270)||(25505419-25505568)
chr1 (118-247)||(24314605-24314734)
chr1 (118-247)||(43810395-43810524)
chr1 (99-366)||(34709322-34709591)
chr1 (300-365)||(25505583-25505648)
chr1 (125-247)||(22576415-22576537)
chr1 (300-366)||(24314504-24314570)
chr1 (119-163)||(28098391-28098435)
chr1 (127-239)||(41181803-41181915)
[»] chr7 (18 HSPs)
chr7 (99-365)||(21439316-21439580)
chr7 (97-313)||(6970526-6970740)
chr7 (118-247)||(25923656-25923785)
chr7 (127-247)||(17804531-17804651)
chr7 (118-247)||(34519030-34519159)
chr7 (118-247)||(45987635-45987764)
chr7 (118-247)||(27941920-27942049)
chr7 (130-247)||(7377315-7377432)
chr7 (118-266)||(33796793-33796941)
chr7 (104-243)||(39060154-39060293)
chr7 (299-365)||(6970402-6970468)
chr7 (300-365)||(25923556-25923621)
chr7 (316-365)||(45987534-45987583)
chr7 (315-366)||(14053994-14054045)
chr7 (315-366)||(14364022-14364073)
chr7 (127-239)||(4076868-4076980)
chr7 (300-366)||(34519194-34519260)
chr7 (127-176)||(7459106-7459155)
[»] chr2 (5 HSPs)
chr2 (99-365)||(15017144-15017409)
chr2 (99-366)||(5325231-5325492)
chr2 (118-247)||(10978430-10978560)
chr2 (128-227)||(22725870-22725969)
chr2 (139-227)||(38182360-38182446)
[»] chr3 (5 HSPs)
chr3 (97-366)||(20894159-20894426)
chr3 (99-365)||(51144534-51144798)
chr3 (117-247)||(54558854-54558984)
chr3 (114-176)||(50543877-50543939)
chr3 (127-239)||(11639559-11639671)
[»] chr4 (23 HSPs)
chr4 (99-366)||(19113903-19114169)
chr4 (99-365)||(30309917-30310179)
chr4 (118-247)||(7472992-7473121)
chr4 (118-366)||(48031568-48031812)
chr4 (118-270)||(8934667-8934816)
chr4 (118-247)||(19644576-19644705)
chr4 (118-270)||(33988194-33988343)
chr4 (147-247)||(23119021-23119121)
chr4 (118-247)||(29554166-29554295)
chr4 (304-365)||(7472893-7472954)
chr4 (139-239)||(40150183-40150283)
chr4 (127-221)||(10563744-10563838)
chr4 (300-358)||(33988358-33988416)
chr4 (300-365)||(8934587-8934652)
chr4 (316-365)||(19644476-19644525)
chr4 (309-366)||(23118920-23118977)
chr4 (309-365)||(49926538-49926594)
chr4 (139-183)||(3861224-3861268)
chr4 (139-183)||(3869981-3870025)
chr4 (127-239)||(18935261-18935373)
chr4 (127-203)||(53779674-53779750)
chr4 (127-221)||(29213416-29213509)
chr4 (127-239)||(12881120-12881232)
[»] chr5 (7 HSPs)
chr5 (99-365)||(11575100-11575364)
chr5 (99-270)||(22095657-22095825)
chr5 (118-169)||(5415571-5415622)
chr5 (309-366)||(22095895-22095952)
chr5 (195-247)||(5415650-5415702)
chr5 (332-365)||(5415730-5415763)
chr5 (127-176)||(40089995-40090044)
[»] chr8 (7 HSPs)
chr8 (192-366)||(13909096-13909268)
chr8 (118-247)||(4988491-4988620)
chr8 (118-247)||(36318916-36319045)
chr8 (300-365)||(4988655-4988720)
chr8 (316-365)||(36319096-36319145)
chr8 (154-247)||(12218479-12218572)
chr8 (118-163)||(11155187-11155232)
[»] scaffold0108 (2 HSPs)
scaffold0108 (118-247)||(10494-10623)
scaffold0108 (310-366)||(10393-10449)
[»] scaffold0007 (1 HSPs)
scaffold0007 (127-239)||(181722-181834)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 99 - 365
Target Start/End: Complemental strand, 33019714 - 33019450
Alignment:
Q  99 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgttt 198  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33019714 gtgttttaataattatgttactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtctcttttatgttt 33019615  T
Q  199 ggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttcggtg-ttcttga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||| |||||| ||| |||||||| |||||||    
T  33019614 ggtactaatagttggtggtcaagccctttacaatgtttgggtattggc---tgagttggttttgttgtagtactgacttctacatttcggtgtttcttga 33019518  T
Q  298 tgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  33019517 tgagtctttgaggcacgccttgtgctaatgaggctcttgttgttaatataattacattttttattgtt 33019450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 97 - 366
Target Start/End: Original strand, 5086428 - 5086695
Alignment:
Q  97 aagtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgt 196  Q
    |||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||| |||||||||||||||||||||||||  |||||| |||    
T  5086428 aagtgttttaataattatgttactcctttgcccaggttgctcgacaaagtaaaatattcgtccttaggttggttgaaagctagaaaagcctcttttttgt 5086527  T
Q  197 ttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgt-acttttcggtgttctt 295  Q
    |||| |||| ||| |||||||||| |||||||||||||||| ||||||||   | |||||||||||||||||||  ||||| | | ||||     | |||    
T  5086528 ttggcactattagatggtggtcaacccctttacaatgtttgagtattggc---taagttggttttgttgttgtacagacttctgaattttgttcctcctt 5086624  T
Q  296 gatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    || || ||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  5086625 gaggaatctttgaggcatgccttgtgctaatgagactcttgttgttaatataattccatttttgattgttc 5086695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 503957 - 504086
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||  |||||||||||    
T  503957 actcctttacccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaaacttcttttttgtttggtacttttagttggtggt 504056  T
Q  218 caagccctttacaatgtttgggtattggct 247  Q
    ||| ||| ||||||||||||||||||||||    
T  504057 caaacccgttacaatgtttgggtattggct 504086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 8263960 - 8263831
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||||||||  |||||||||||    
T  8263960 actcctttatccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagcttctttattgtttggtacttttagttggtggt 8263861  T
Q  218 caagccctttacaatgtttgggtattggct 247  Q
    ||| ||| ||||||||||||||||||||||    
T  8263860 caaacccgttacaatgtttgggtattggct 8263831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 24882841 - 24882755
Alignment:
Q  19 agagccttcattcctgaagggaatgtcgatgatttggcaaccatataaccctgccaccattttcaattataattaataaagtgtttt 105  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24882841 agagccttcattcctgaagggaatgttgatgatttggcaaccatataaccctgccaccattttcaattataattaataaaatgtttt 24882755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 19227228 - 19227099
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||||| | |||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |  |||||| ||||||| |||  |||||||||||    
T  19227228 actcctttactcaggttgcttgacaaagttaaatatttgtctctaggttggttgaaagctagaaacgcttcttttttgtttggcacttttagttggtggt 19227129  T
Q  218 caagccctttacaatgtttgggtattggct 247  Q
    ||| ||| ||||||||||||||||||||||    
T  19227128 caaacccgttacaatgtttgggtattggct 19227099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 33639632 - 33639503
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||||| |||||||||||||| ||||| |||||||||||  |||||||||||||||||||||| |  |||||| ||||||  |||  |||||||||||    
T  33639632 actcctttacccaggttgcttgacaaagttaaatatttgtccctaggttggttgaaagctagaaacgcttcttttttgtttgacacttttagttggtggt 33639533  T
Q  218 caagccctttacaatgtttgggtattggct 247  Q
    ||| ||| ||||||||||||||||| ||||    
T  33639532 caaacccgttacaatgtttgggtatcggct 33639503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 376 - 426
Target Start/End: Complemental strand, 24882769 - 24882719
Alignment:
Q  376 ttaataaaatgttttttgagagggagtaataaaatgttaacattacctttg 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24882769 ttaataaaatgttttttgagagggagtaataaaatgttaacattacctttg 24882719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 15644225 - 15644282
Alignment:
Q  309 ggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  15644225 ggcacgtcttgtgctaatgagactcttgttgttaatataattccatttttgattgttc 15644282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 366
Target Start/End: Original strand, 504121 - 504187
Alignment:
Q  300 agtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    |||||||  |||||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||    
T  504121 agtctttgtggcacgtcttgtgctattgagactcttgttgttaatataattccatttttgattgttc 504187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 1334793 - 1334845
Alignment:
Q  195 gtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 247  Q
    |||||||||| |||| ||||||||||||||||| |||||||||||||||||||    
T  1334793 gtttggtactgataggtggtggtcaagcccttttcaatgtttgggtattggct 1334845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 19227048 - 19226998
Alignment:
Q  316 cttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    ||||||||| |||| |||||||| ||||| |||||||||||||||||||||    
T  19227048 cttgtgctattgagactcttgttgttaatttaattccatttttgattgttc 19226998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 17874237 - 17874347
Alignment:
Q  128 ccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaagcccttt 227  Q
    |||||||| | |||||||| ||||||||||||||||  ||||||||||| | ||||||   ||||| |||||| ||  |||  ||||| ||||| || ||    
T  17874237 ccaggttgttagataaagttaaatatttgtctttagcctggttgaaagccaaaaaagttgtttttaggtttggcacatataagtggtgctcaagtccctt 17874336  T
Q  228 acaatgtttgg 238  Q
     ||||||||||    
T  17874337 ccaatgtttgg 17874347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 103 - 366
Target Start/End: Complemental strand, 7178615 - 7178354
Alignment:
Q  103 tttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggta 202  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |    
T  7178615 tttaataattatgttactcctttgcccaggttgcttgacaaagtaaaatatctgtctttaggttggttgaaagctagaaaagtctcttttatatttggca 7178516  T
Q  203 ctaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttcggtg-ttcttgatgag 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||||||||| |||||| ||||||| |||| ||||||| |||    
T  7178515 ctaatagttggtggtcaagccctttacaatgtttgggtattggc---tgagttggtttcgttgttgtactgacttctactttttggtgtttcttgacgag 7178419  T
Q  302 tctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  7178418 tctttgaggcacgccttgtgctaatgagactcttgttgttaatataattccatttttgattgttc 7178354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 118 - 270
Target Start/End: Original strand, 25505419 - 25505568
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |  |||||| ||||||| |||  |||||||||||    
T  25505419 actcctttacccaggttgcttgataaagtaaaatatttgtctttaagttggttgaaagctagaaacgcttcttttttgtttggcacttttagttggtggt 25505518  T
Q  218 caagccctttacaatgtttgggtattggctgatgagttggttttgttgttgta 270  Q
    ||| ||| |||||||||||||||||||||| |    |||||||||||||||||    
T  25505519 caaacccgttacaatgtttgggtattggctaac---ttggttttgttgttgta 25505568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 24314734 - 24314605
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||   |||||| ||||||| |||| |||||||||||    
T  24314734 actcctttacccaggttgcttgataaagttaaatatttgtctttaggttggttgaaggctagaaaaacttcttttttgtttggcactattagttggtggt 24314635  T
Q  218 caagccctttacaatgtttgggtattggct 247  Q
    ||| ||| ||||||||||||||||||||||    
T  24314634 caaacccgttacaatgtttgggtattggct 24314605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 43810524 - 43810395
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||| |||| |||||| | |||||||||||||| ||||||||||||||||||||||||||||||||  | |||  | |||||||| |||| |||||||    
T  43810524 actcctatgcctaggttgttggataaagtaaaatacttgtctttaggttggttgaaagctagaaaagttacattttcgcttggtactgataggtggtggt 43810425  T
Q  218 caagccctttacaatgtttgggtattggct 247  Q
    |||||||||| |||||||||||||||||||    
T  43810424 caagccctttccaatgtttgggtattggct 43810395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 99 - 366
Target Start/End: Original strand, 34709322 - 34709591
Alignment:
Q  99 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgttt 198  Q
    |||||| ||||||| | | ||||||||||| |||||||| || ||||||||||||||||||||||||||| || || |||||||||   ||||| |||||    
T  34709322 gtgtttcaataattcttttactcctttgcctaggttgctcgacaaagtaaaatatttgtctttaggttggctggaaactagaaaagctacttttttgttt 34709421  T
Q  199 ggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgac--ttgtacttttcggtgttcttg 296  Q
    || ||| |||| |||| ||||||||||||||||||| |||| |||| |   | ||||||||||||||| |||  |||  ||| ||  |   || ||| ||    
T  34709422 ggcactgataggtggttgtcaagccctttacaatgtctgggcattgac---taagttggttttgttgtcgtacagacaattggacactgttgt-ttcctg 34709517  T
Q  297 atgagtctttaaggcacgccttgtgctaatgaggctcttgt----tattaatataattccatttttgattgttc 366  Q
    | ||||||||  |||||| ||||||||| |||| |||||||    | |||||||||||||||||||||||||||    
T  34709518 aggagtctttgtggcacgtcttgtgctattgagactcttgtgtgctgttaatataattccatttttgattgttc 34709591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 25505583 - 25505648
Alignment:
Q  300 agtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
    |||||||  |||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  25505583 agtctttgtggcacgtcttgtgctaatgagactcttgttgttaatataattccatttttaattgtt 25505648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 247
Target Start/End: Complemental strand, 22576537 - 22576415
Alignment:
Q  125 tgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaagccc 224  Q
    |||| |||||||| || ||||||||||| || |||||||| ||| |||||| || |||||   | |||  ||||||| || ||||  |||||||||||||    
T  22576537 tgcctaggttgctggacaaagtaaaatacttttctttaggctggctgaaagataaaaaagccaccttttcgtttggttctgatagggggtggtcaagccc 22576438  T
Q  225 tttacaatgtttgggtattggct 247  Q
    ||| ||||||||||| |||||||    
T  22576437 ttttcaatgtttgggcattggct 22576415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 24314570 - 24314504
Alignment:
Q  300 agtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    |||||||  |||||| ||||||||| |||| ||| |||| ||||||||||| |||||||||||||||    
T  24314570 agtctttgtggcacgtcttgtgctagtgagactcctgttgttaatataatttcatttttgattgttc 24314504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 28098391 - 28098435
Alignment:
Q  119 ctcctttgcccaggttgcttgataaagtaaaatatttgtctttag 163  Q
    ||||| |||| |||||||| |||||||| ||||||||||||||||    
T  28098391 ctcctatgcctaggttgctagataaagtgaaatatttgtctttag 28098435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 41181915 - 41181803
Alignment:
Q  127 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaagccctt 226  Q
    ||||||||| | |||||||| |||||| |||||||||  ||||||||||| | ||| ||   ||||| ||||||| |  |||| ||||| |||||||| |    
T  41181915 cccaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttggttcagatagatggtgctcaagcccct 41181816  T
Q  227 tacaatgtttggg 239  Q
    | |||| ||||||    
T  41181815 tccaatatttggg 41181803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 99 - 365
Target Start/End: Original strand, 21439316 - 21439580
Alignment:
Q  99 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgttt 198  Q
    ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| ||    
T  21439316 gtgttttaataatcatgtgactcctttgcccaggttgcttgacaaagtaaaatatttgtccttaggttggttgaaaggtagaaaagtctcttttatgctt 21439415  T
Q  199 ggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttcggtg-ttcttga 297  Q
    || |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||||||||| |||||| ||||||| |||| |||||||    
T  21439416 ggcactaatagttggtggtcaagccctttacaatgtttgggtattggc---tgagttggtttcgttgttgtactgacttctactttttggtgtttcttga 21439512  T
Q  298 tgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
     |||||||| |||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||    
T  21439513 cgagtctttgaggcacgccttgcgctaatgagactcttgttgttaatataatttcatttttgattgtt 21439580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 97 - 313
Target Start/End: Complemental strand, 6970740 - 6970526
Alignment:
Q  97 aagtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgt 196  Q
    |||||||||||||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  6970740 aagtgttttaataattctgttactcctttgcccaagttgcttgacaaagtaaaatatttgtctttaggtcggttgaaagttagaaaagtttcttttatgt 6970641  T
Q  197 ttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttcggtg-ttctt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||| |||||| ||| ||| |||| ||||     
T  6970640 ttggtactaatagttggtggtcaagccctttacaatgtttgggtattggc---tgagttgattttgttgttgtactgacttctacattttggtgtttctg 6970544  T
Q  296 gatgagtctttaaggcac 313  Q
    || |||||||| ||||||    
T  6970543 gacgagtctttgaggcac 6970526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 25923785 - 25923656
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||| |||||||||||  |||||||||||    
T  25923785 actcctttacccaggttgcttgataaagtaaaatatttgtctttaggttggctgaaagctagaaaagcttcttttttgtttggtacttttagttggtggt 25923686  T
Q  218 caagccctttacaatgtttgggtattggct 247  Q
    ||| ||| ||||||||||||||||||||||    
T  25923685 caaacccgttacaatgtttgggtattggct 25923656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 17804651 - 17804531
Alignment:
Q  127 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaagccctt 226  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||| |||||||||||  |||||||||||||| ||| |    
T  17804651 cccagattgcttgataaagtaaaatatttgtctttaggttggttgaaaactagaaaagcttcttttttgtttggtacttttagttggtggtcaaacccgt 17804552  T
Q  227 tacaatgtttgggtattggct 247  Q
    |||||||||||||||||||||    
T  17804551 tacaatgtttgggtattggct 17804531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 34519030 - 34519159
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |  |||||| ||||||| |||  |||||||||||    
T  34519030 actcctttacccaggttgcttgacaaagttaaatatttgtctctaggttggttgaaagctagaaacgcttcttttttgtttggcacttttagttggtggt 34519129  T
Q  218 caagccctttacaatgtttgggtattggct 247  Q
    ||| ||| ||||||||||||||||||||||    
T  34519130 caaacccgttacaatgtttgggtattggct 34519159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 45987764 - 45987635
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |  |||||| ||||||| |||  |||||||||||    
T  45987764 actcctttacccaggttgcttgacaaagttaaatatttgtctctaggttggttgaaagctagaaacgcttcttttttgtttggcacttttagttggtggt 45987665  T
Q  218 caagccctttacaatgtttgggtattggct 247  Q
    ||| ||| ||| ||||||||||||||||||    
T  45987664 caaacccgttataatgtttgggtattggct 45987635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 27941920 - 27942049
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaag-tatcttttatgtttggtactaatagttggtgg 216  Q
    |||||| |||| |||||| | || ||||||||||| |||||||||| |||||||||||||| ||||| ||| ||||  |||||||||| |||| ||||||    
T  27941920 actcctatgcctaggttgttggacaaagtaaaatacttgtctttagcttggttgaaagctaaaaaagctatattttc-gtttggtactgataggtggtgg 27942018  T
Q  217 tcaagccctttacaatgtttgggtattggct 247  Q
    ||||||||||| |||||||||||||||||||    
T  27942019 tcaagcccttttcaatgtttgggtattggct 27942049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 130 - 247
Target Start/End: Complemental strand, 7377432 - 7377315
Alignment:
Q  130 aggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaagccctttac 229  Q
    |||||||| || ||||||||||| ||||||||||||||| |||||| || ||| |   | |||  |||||||||| |||| ||||||||||||||||| |    
T  7377432 aggttgctggacaaagtaaaatacttgtctttaggttggctgaaagttaaaaatgccacattttcgtttggtactgataggtggtggtcaagccctttcc 7377333  T
Q  230 aatgtttgggtattggct 247  Q
    ||||||||||||||||||    
T  7377332 aatgtttgggtattggct 7377315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 266
Target Start/End: Original strand, 33796793 - 33796941
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||| |||| |||||||| || | ||||||||| ||||||||||| ||  |||||| || |||||   | ||| ||||||||||  |||| ||||| |    
T  33796793 actcctatgcctaggttgctggacatagtaaaatacttgtctttaggctgactgaaagttaaaaaagccacctttttgtttggtacagataggtggtgtt 33796892  T
Q  218 caagccctttacaatgtttgggtattggctgatgagttggttttgttgt 266  Q
    |||||||||| ||||||||||||||||||| || ||||| |||||||||    
T  33796893 caagcccttttcaatgtttgggtattggctaattagttgcttttgttgt 33796941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 104 - 243
Target Start/End: Original strand, 39060154 - 39060293
Alignment:
Q  104 ttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtac 203  Q
    ||||||||| | | |||||| |||| |||||| | || ||||||||||| |||||||||| |||||||||| ||| |||||| |  |||  |||||||||    
T  39060154 ttaataattttattactcctatgcctaggttgttggacaaagtaaaatacttgtctttagcttggttgaaaactaaaaaagttttattttcgtttggtac 39060253  T
Q  204 taatagttggtggtcaagccctttacaatgtttgggtatt 243  Q
    | |||| |||||||||| |||||| |||||||| ||||||    
T  39060254 tgataggtggtggtcaaacccttttcaatgtttaggtatt 39060293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 6970468 - 6970402
Alignment:
Q  299 gagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
    |||||||| |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  6970468 gagtctttgaggcacgccttgtgctaacgaggctcttgttgttaatataatttcatttttgattgtt 6970402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 25923621 - 25923556
Alignment:
Q  300 agtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
    |||||||  |||||| ||||||||| |||| |||||||| |||||||||| |||||||||||||||    
T  25923621 agtctttgtggcacgtcttgtgctattgagactcttgttgttaatataatcccatttttgattgtt 25923556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 45987583 - 45987534
Alignment:
Q  316 cttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||||||    
T  45987583 cttgtgctattgagactcttgttgttaatataattccatttttgattgtt 45987534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 366
Target Start/End: Complemental strand, 14054045 - 14053994
Alignment:
Q  315 ccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    |||||||||| |||| ||||| || |||||||||||||||||||||||||||    
T  14054045 ccttgtgctattgagactcttattgttaatataattccatttttgattgttc 14053994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 366
Target Start/End: Complemental strand, 14364073 - 14364022
Alignment:
Q  315 ccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    |||||||||| |||| ||||| || |||||||||||||||||||||||||||    
T  14364073 ccttgtgctattgagactcttattgttaatataattccatttttgattgttc 14364022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 4076980 - 4076868
Alignment:
Q  127 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaagccctt 226  Q
    |||||||||||  ||||||| |||||| |||||||||  ||||||||||||| ||| ||   ||||| |||||||||  |||  ||||| ||||| || |    
T  4076980 cccaggttgctaaataaagttaaatatatgtctttagcctggttgaaagctaaaaaggttgtttttaggtttggtacagataagtggtgttcaagtccct 4076881  T
Q  227 tacaatgtttggg 239  Q
    | |||||||||||    
T  4076880 ttcaatgtttggg 4076868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 366
Target Start/End: Original strand, 34519194 - 34519260
Alignment:
Q  300 agtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    |||||||  |||||  ||||||||| |||| |||||||| ||||||| ||| |||||||||||||||    
T  34519194 agtctttgtggcacatcttgtgctattgagactcttgttgttaatattatttcatttttgattgttc 34519260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 7459106 - 7459155
Alignment:
Q  127 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagc 176  Q
    ||||||||| | |||||||| ||||||||||||||||  |||||||||||    
T  7459106 cccaggttgttagataaagttaaatatttgtctttagcctggttgaaagc 7459155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 99 - 365
Target Start/End: Complemental strand, 15017409 - 15017144
Alignment:
Q  99 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgttt 198  Q
    ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||    
T  15017409 gtgttttaataatcatgtgactcctttgcccaggttgcttgacaaagtaaaatatttgtccttaggttggttgaaagttagaaaagtctcttttatgttt 15017310  T
Q  199 ggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttcggtg--ttcttg 296  Q
    |  |||||||||||||||||||||||||||||||||||||||||||   | ||||||||||| ||||||||| |||||| ||||||| ||||  ||||||    
T  15017309 gacactaatagttggtggtcaagccctttacaatgtttgggtattg---gttgagttggtttcgttgttgtactgacttctactttttggtgttttcttg 15017213  T
Q  297 atgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
    | |||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  15017212 acgagtctttgaggcacgccttgtgctaatgagactcttgttgttaatataattccattttttattgtt 15017144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 99 - 366
Target Start/End: Complemental strand, 5325492 - 5325231
Alignment:
Q  99 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgttt 198  Q
    ||||||||||||||| || ||| ||||||| ||||||||||| |||||||||||| |||| |||||||||||||||| ||||||||| ||||||||||||    
T  5325492 gtgttttaataattacgttacttctttgccgaggttgcttgacaaagtaaaatatctgtccttaggttggttgaaagttagaaaagtctcttttatgttt 5325393  T
Q  199 ggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttcggtg-ttcttga 297  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||   ||||||||||| ||||||||    |||| ||||||| |||| |||||||    
T  5325392 ggcactaatagttggtggtcaagccctttacaatgtttggatattggc---tgagttggtttcgttgttgt----acttctactttttggtgtttcttga 5325300  T
Q  298 tgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
     |||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  5325299 cgagtctttgaggcacgccttgtgctaatgagactcttgttgttaatataatttcatttttgattgttc 5325231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 10978430 - 10978560
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatc-ttttatgtttggtactaatagttggtgg 216  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||| |||||| || |  ||||||||||    
T  10978430 actcctttacccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagcttctttttttgtttgatatttttagttggtgg 10978529  T
Q  217 tcaagccctttacaatgtttgggtattggct 247  Q
    |||| ||| |||||||||||| |||||||||    
T  10978530 tcaaacccgttacaatgtttgagtattggct 10978560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 22725870 - 22725969
Alignment:
Q  128 ccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaagcccttt 227  Q
    ||||||||||  | ||||||||||||||||||||||| ||| ||||||| | ||| |   | ||||||| ||||||  |||| |||||||||||||||||    
T  22725870 ccaggttgctgaacaaagtaaaatatttgtctttaggatggctgaaagccaaaaaggccacctttatgtatggtaccgataggtggtggtcaagcccttt 22725969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 38182446 - 38182360
Alignment:
Q  139 gataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaagcccttt 227  Q
    |||||||||||||||||| ||||||| ||   |||||||| ||||  ||  ||||||||||||||| |||| |||||||| | ||||||    
T  38182446 gataaagtaaaatatttgactttaggctgtcagaaagctaaaaaatcat--tttatgtttggtactgataggtggtggtcgaacccttt 38182360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 97 - 366
Target Start/End: Original strand, 20894159 - 20894426
Alignment:
Q  97 aagtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgt 196  Q
    ||||||||||||||  |||| ||||||||||||||||||||||| |||||||||||| | || ||| |||||||||||||||||||||| |||||||| |    
T  20894159 aagtgttttaataaccatgttactcctttgcccaggttgcttgacaaagtaaaatatctatccttaagttggttgaaagctagaaaagtctcttttatat 20894258  T
Q  197 ttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttcggtg-ttctt 295  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||   |||| |||||| ||||||||| |||||| ||||||| |||| |||||    
T  20894259 ttggcactaatagttggtggtcaagccctttacaatgtttgggtattggc---tgagatggtttcgttgttgtactgacttctactttttggtgtttctt 20894355  T
Q  296 gatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    || |||||||| ||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||    
T  20894356 gacgagtctttgaggcacgccttatgctaatgagactcttgttgttaatataattccatttttaattgttc 20894426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 99 - 365
Target Start/End: Complemental strand, 51144798 - 51144534
Alignment:
Q  99 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgttt 198  Q
    |||||| ||||||| | | |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||    ||||| |||||    
T  51144798 gtgtttcaataattctattactcctttgcccaggttgctcggcaaagtaaaatatttgtctttaggttggttgaaagctagaaaaactacttttttgttt 51144699  T
Q  199 ggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgact--tgtacttttcggtgttcttg 296  Q
    || ||||||||||||||||||||||||||||||||| |||||||||||| ||   |||||||||||||||||| ||||  || |||||   || ||||||    
T  51144698 ggcactaatagttggtggtcaagccctttacaatgtctgggtattggctaat---ttggttttgttgttgtaaagactactgaactttgttgt-ttcttg 51144603  T
Q  297 atgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
    | |||||||   |||||| |||||||||||||| |||| ||| || |||||||||||||||| ||||||    
T  51144602 aggagtcttggtggcacgtcttgtgctaatgagactctggttgtttatataattccattttttattgtt 51144534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 117 - 247
Target Start/End: Original strand, 54558854 - 54558984
Alignment:
Q  117 cactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtgg 216  Q
    ||||||| |||| | |||| | |||||||||||||||||||||||| ||||||||||||||| ||||||  | |||  ||| |||||| |||| ||||||    
T  54558854 cactcctatgcctaagttgttagataaagtaaaatatttgtctttaagttggttgaaagctaaaaaagttacattttcgttaggtactgataggtggtgg 54558953  T
Q  217 tcaagccctttacaatgtttgggtattggct 247  Q
    ||||||||||| |||||||||||||||||||    
T  54558954 tcaagccctttccaatgtttgggtattggct 54558984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 50543939 - 50543877
Alignment:
Q  114 tgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagc 176  Q
    ||||||| || ||||||||||| | |||||||| |||||| |||||||||  |||||||||||    
T  50543939 tgtcacttctatgcccaggttgttagataaagttaaatatatgtctttagcctggttgaaagc 50543877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 11639671 - 11639559
Alignment:
Q  127 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaagccctt 226  Q
    ||||||||| | |||||||| |||||| |||||||||  ||||||||||| | ||| ||   ||||| ||||||| |  |||| ||||| ||||| || |    
T  11639671 cccaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaaggtggtttttaggtttggttcagataggtggtgttcaagtccct 11639572  T
Q  227 tacaatgtttggg 239  Q
    ||||||| |||||    
T  11639571 tacaatgcttggg 11639559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 99 - 366
Target Start/End: Complemental strand, 19114169 - 19113903
Alignment:
Q  99 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgttt 198  Q
    ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  19114169 gtgttttaataatcatgtgactcctttgcccaggttgcttgacaaagtaaaatatttgtccttaggttggttgaaagctagaaaagtctattttatgttt 19114070  T
Q  199 ggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttcggtg--ttcttg 296  Q
    || ||| |||||||||| ||||||||||||||||||||| ||||||||   ||||||||| | ||||||||  |||||| ||||||| ||||  ||||||    
T  19114069 ggcactcatagttggtgatcaagccctttacaatgtttgagtattggc---tgagttggtgtcgttgttgttctgacttctactttttggtgttttcttg 19113973  T
Q  297 atgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    | |||||||| ||||| |||||||||||||||  |||||||| |||||||||||||||||||||||||||    
T  19113972 acgagtctttgaggcatgccttgtgctaatgacactcttgttgttaatataattccatttttgattgttc 19113903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 99 - 365
Target Start/End: Complemental strand, 30310179 - 30309917
Alignment:
Q  99 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgttt 198  Q
    ||||||||||||| || | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  30310179 gtgttttaataatcatatgactcctttgcccaggttgcttgacaaagtaaaatatttgtccttaggttggttgaaagctagaaaagtctcttttatgttt 30310080  T
Q  199 ggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttcggtg--ttcttg 296  Q
    || ||| |   ||||||||||| ||||||||||||||||| |||||||   ||||||||| | ||||||||| |||||| ||||||| ||||  ||||||    
T  30310079 ggcactca---ttggtggtcaaaccctttacaatgtttggatattggc---tgagttggtgtcgttgttgtattgacttctactttttggtgttttcttg 30309986  T
Q  297 atgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
    | |||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  30309985 acgagtctttgaggcacgccttgtgctaacgagactcttgttgttaatataattccatttttgattgtt 30309917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 7473121 - 7472992
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||| |||  |||||||||||    
T  7473121 actcctttacccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagcttcttttttgtttggcacttttagttggtggt 7473022  T
Q  218 caagccctttacaatgtttgggtattggct 247  Q
    ||| ||| ||||||||||||||||||||||    
T  7473021 caaacccgttacaatgtttgggtattggct 7472992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 118 - 366
Target Start/End: Original strand, 48031568 - 48031812
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    ||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||  ||||| | ||||| |||||||| ||||||     
T  48031568 actcctttgcccaggttactcgacaaagtaaaatatttgtctttaggttggttaaaagctagaaaagttacttttttatttggcactaatagatggtggg 48031667  T
Q  218 caagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgact--tgtacttttcggtgttcttgatgagtctttaaggcacgc 315  Q
    |||| |||||||||| | |||||||||||   | |||||||||||||||||||   |||  || ||||| | || |||||||  |||||||  |||||||    
T  48031668 caag-cctttacaatttctgggtattggc---taagttggttttgttgttgtagatactcctgaactttgctgt-ttcttgactagtctttgtggcacgc 48031762  T
Q  316 cttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    ||||||||| |||| |||||||| |||||||||||||| ||||||||||||    
T  48031763 cttgtgctattgagactcttgttgttaatataattcca-ttttgattgttc 48031812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 118 - 270
Target Start/End: Complemental strand, 8934816 - 8934667
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||| ||||||| |||  |||||||||||    
T  8934816 actcctttacccaggttgcttgataaagtaaactatttgtctttaggttggttgaaagctagaaaagcttcttttttgtttggaacttttagttggtggt 8934717  T
Q  218 caagccctttacaatgtttgggtattggctgatgagttggttttgttgttgta 270  Q
    ||| ||| ||| |||||||||||||||||| |    |||||||||||||||||    
T  8934716 caaacccgttataatgtttgggtattggctaac---ttggttttgttgttgta 8934667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 19644705 - 19644576
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  |||||| ||||||| | |  |||||||||||    
T  19644705 actcctttacccaggttgcttgacaaagtaaaatatttgtctttaggttggttgaaagctagaaacgcttcttttttgtttggcatttttagttggtggt 19644606  T
Q  218 caagccctttacaatgtttgggtattggct 247  Q
    ||| ||| ||||||||||||||||||||||    
T  19644605 caaacccgttacaatgtttgggtattggct 19644576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 118 - 270
Target Start/End: Original strand, 33988194 - 33988343
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |  |||||| ||||||| |||  || ||||||||    
T  33988194 actcctttacccaggttgcttgacaaagtaaaatatttatctttaggttggttgaaagctagaaacgcttcttttttgtttggcacttttaattggtggt 33988293  T
Q  218 caagccctttacaatgtttgggtattggctgatgagttggttttgttgttgta 270  Q
    ||| ||| |||||||||||||||||||||| |    |||||||||||||||||    
T  33988294 caaacccgttacaatgtttgggtattggctaac---ttggttttgttgttgta 33988343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 23119121 - 23119021
Alignment:
Q  147 aaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggc 246  Q
    |||||||||||||||||||||||||||||||||||||   | |||| |||||||||||  |||||||||||||| ||| ||||||||| |||||||||||    
T  23119121 aaaatatttgtctttaggttggttgaaagctagaaaaactttttttttgtttggtacttttagttggtggtcaaacccgttacaatgtctgggtattggc 23119022  T
Q  247 t 247  Q
    |    
T  23119021 t 23119021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 29554166 - 29554295
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||| |||| |||||| | || ||||||||||| |||||||||| |||||||||||||| |||||  |  |||  |||||||||| |||| |||||||    
T  29554166 actcctatgcctaggttgttggacaaagtaaaatacttgtctttagcttggttgaaagctaaaaaagctttattttcgtttggtactgataggtggtggt 29554265  T
Q  218 caagccctttacaatgtttgggtattggct 247  Q
    |||||||||| ||||||||| |||||||||    
T  29554266 caagcccttttcaatgtttgagtattggct 29554295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 7472954 - 7472893
Alignment:
Q  304 tttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
    |||| |||||| ||||||||| |||| |||||||||||||||||||||||||||| ||||||    
T  7472954 tttatggcacgtcttgtgctattgagactcttgttattaatataattccattttttattgtt 7472893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 40150283 - 40150183
Alignment:
Q  139 gataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgg 238  Q
    |||||||||||||| |||||| |||||||| ||||||| | ||||||  | ||||||||||  || ||||| |||||||| | |||||| ||||||||||    
T  40150283 gataaagtaaaatacttgtctctaggttggctgaaagccaaaaaagtcacatttatgtttgacacaaataggtggtggtcgaacccttttcaatgtttgg 40150184  T
Q  239 g 239  Q
    |    
T  40150183 g 40150183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 10563744 - 10563838
Alignment:
Q  127 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaag 221  Q
    ||||||||| | |||||||| ||||||||||||||||  ||||||||||| | ||||||   ||||| |||||||||  |||||||||| |||||    
T  10563744 cccaggttgttagataaagttaaatatttgtctttagcctggttgaaagcaaaaaaagttgtttttaggtttggtacagatagttggtgctcaag 10563838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 300 - 358
Target Start/End: Original strand, 33988358 - 33988416
Alignment:
Q  300 agtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccattttt 358  Q
    |||||||  |||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  33988358 agtctttgtggcacgtcttgtgctaatgagactcttgttgttaatataattccattttt 33988416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 8934652 - 8934587
Alignment:
Q  300 agtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
    |||||||  |||||| ||||||||| |||| || ||||| ||||||||||||||||||||||||||    
T  8934652 agtctttgtggcacgtcttgtgctattgagactattgttgttaatataattccatttttgattgtt 8934587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 19644525 - 19644476
Alignment:
Q  316 cttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||||||    
T  19644525 cttgtgctattgagactcttgttgttaatataattccatttttgattgtt 19644476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 23118977 - 23118920
Alignment:
Q  309 ggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    |||||| ||||||||| |||| |||||||| |||||||||| ||||||||||||||||    
T  23118977 ggcacgtcttgtgctattgagactcttgttgttaatataatcccatttttgattgttc 23118920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 49926538 - 49926594
Alignment:
Q  309 ggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
    |||||| |||||||||||||| |||||||| |||||||||||| |||||| ||||||    
T  49926538 ggcacgtcttgtgctaatgagactcttgttgttaatataattctattttttattgtt 49926594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 3861268 - 3861224
Alignment:
Q  139 gataaagtaaaatatttgtctttaggttggttgaaagctagaaaa 183  Q
    |||||||||||||||||||||||||| ||| ||||||||| ||||    
T  3861268 gataaagtaaaatatttgtctttaggctggatgaaagctaaaaaa 3861224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 3870025 - 3869981
Alignment:
Q  139 gataaagtaaaatatttgtctttaggttggttgaaagctagaaaa 183  Q
    |||||||||||||||||||||||||| ||| ||||||||| ||||    
T  3870025 gataaagtaaaatatttgtctttaggctggatgaaagctaaaaaa 3869981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 18935373 - 18935261
Alignment:
Q  127 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaagccctt 226  Q
    ||||||||| | |||||||| ||||||  ||||||||  ||||||||||| | ||| ||   ||||| |||||||||  |||||||||| ||||| || |    
T  18935373 cccaggttgttagataaagttaaatataagtctttagcctggttgaaagccaaaaatgttgtttttaggtttggtacagatagttggtgttcaagtccct 18935274  T
Q  227 tacaatgtttggg 239  Q
    | |||||||||||    
T  18935273 ttcaatgtttggg 18935261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 53779750 - 53779674
Alignment:
Q  127 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtac 203  Q
    ||||||||| | |||||||| ||||||||||||||||  ||||||||||| | ||||||   ||||| |||||||||    
T  53779750 cccaggttgttagataaagttaaatatttgtctttagcctggttgaaagccaaaaaagttgtttttaggtttggtac 53779674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 29213416 - 29213509
Alignment:
Q  127 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaag 221  Q
    ||||||||| | |||||||| ||||||||||||||||  | ||||||||| | |||||| | ||||| |||||||||  |||| ||||| |||||    
T  29213416 cccaggttgttagataaagttaaatatttgtctttagcctagttgaaagccaaaaaagt-tgttttaggtttggtacagataggtggtgctcaag 29213509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 12881120 - 12881232
Alignment:
Q  127 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaagccctt 226  Q
    ||||||||| | |||||||| |||||| |||||||||  ||||||||||| | ||||||   ||||| ||||||| |  |||| ||||| ||||| || |    
T  12881120 cccaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaaagttgtttttaggtttggttcagataggtggtgctcaagtccct 12881219  T
Q  227 tacaatgtttggg 239  Q
    | ||||| |||||    
T  12881220 tccaatgcttggg 12881232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 99 - 365
Target Start/End: Original strand, 11575100 - 11575364
Alignment:
Q  99 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgttt 198  Q
    ||||||||||||| |||| |||| ||||||||| || ||||| ||||||||||||||||| |||| ||||||||||||||||||||| |  |||||||||    
T  11575100 gtgttttaataatcatgtgactcgtttgcccagattacttgacaaagtaaaatatttgtccttagattggttgaaagctagaaaagtct-atttatgttt 11575198  T
Q  199 ggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttcggtg--ttcttg 296  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||   | ||||||| | ||||||||| |||||| ||||||| ||||  || |||    
T  11575199 ggcactcatagttggtggtcaagccctttacaatgtttgggtattggc---ttagttggtgtcgttgttgtactgacttctactttttggtgttttgttg 11575295  T
Q  297 atgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
    | |||| ||| |||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||    
T  11575296 acgagtatttgaggcacgctttgtgctaatgagactcttgttgttaatataattccattttcgattgtt 11575364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 99 - 270
Target Start/End: Original strand, 22095657 - 22095825
Alignment:
Q  99 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgttt 198  Q
    |||||| ||||||| | | | ||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||   || || |||||    
T  22095657 gtgtttcaataattctattattcctttgtccaggttgctcgacaaagtaaaatatttgtctttaggttggttgaaagctagaaaagctactcttttgttt 22095756  T
Q  199 ggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgta 270  Q
    |  ||||||||||||||||||||||||||||||||| |||||||||||| ||   |||||||||||| ||||    
T  22095757 gacactaatagttggtggtcaagccctttacaatgtctgggtattggctaat---ttggttttgttggtgta 22095825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 5415571 - 5415622
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggt 169  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  5415571 actcctttacccaggttgcttgataaagtaaaatatttgtgtttaggttggt 5415622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 22095895 - 22095952
Alignment:
Q  309 ggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    ||||||||||||||||||||| |||| ||| || ||||||||||||||||||||||||    
T  22095895 ggcacgccttgtgctaatgagactctggttgtttatataattccatttttgattgttc 22095952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 5415650 - 5415702
Alignment:
Q  195 gtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 247  Q
    |||||| |||  |||||||||||||| ||| ||||||||||||||||||||||    
T  5415650 gtttggcacttttagttggtggtcaaacccgttacaatgtttgggtattggct 5415702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 365
Target Start/End: Original strand, 5415730 - 5415763
Alignment:
Q  332 tcttgttattaatataattccatttttgattgtt 365  Q
    ||||||| ||||||||||||||||||||||||||    
T  5415730 tcttgttgttaatataattccatttttgattgtt 5415763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 40090044 - 40089995
Alignment:
Q  127 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagc 176  Q
    ||||||||| | |||||||| |||||| ||||||||| ||||||||||||    
T  40090044 cccaggttgttagataaagtcaaatatatgtctttagcttggttgaaagc 40089995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 8e-65; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 192 - 366
Target Start/End: Complemental strand, 13909268 - 13909096
Alignment:
Q  192 tatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttcggtgt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| |||||| ||| |||||||||    
T  13909268 tatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctga---gttggttttgttgttgtactgacttctacatttcggtgt 13909172  T
Q  292 t-cttgatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    | |||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||    
T  13909171 ttcttgatgagtctttgaggcacgccttgtgctaataaggctcttgttgttaatataatttcatttttgattgttc 13909096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 4988491 - 4988620
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  |||||| ||||||  |||  |||||||||||    
T  4988491 actcctttacccaggttgcttgacaaagtaaaatatttgtctttaggttggttgaaagctagaaacgcttcttttttgtttgacacttttagttggtggt 4988590  T
Q  218 caagccctttacaatgtttgggtattggct 247  Q
    ||| ||| ||||||||||||||||||||||    
T  4988591 caaacccgttacaatgtttgggtattggct 4988620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 36318916 - 36319045
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||||| ||||  ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||||||||| |  |||||||||||    
T  36318916 actcctttacccaaattgcttgataaagtaaaatatttatctttaggttggctgaaagctagaaaagtttcttttttgtttggtagttttagttggtggt 36319015  T
Q  218 caagccctttacaatgtttgggtattggct 247  Q
    ||| ||||||||||||||| ||||||||||    
T  36319016 caaaccctttacaatgtttaggtattggct 36319045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 4988655 - 4988720
Alignment:
Q  300 agtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
    |||||||| |||||  ||||||||| |||| ||||||||  ||||||||||| |||||||||||||    
T  4988655 agtctttatggcacatcttgtgctattgagactcttgttggtaatataattctatttttgattgtt 4988720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 36319096 - 36319145
Alignment:
Q  316 cttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 365  Q
    ||||||||| |||| |||||||| |||||||||| |||||||||||||||    
T  36319096 cttgtgctattgagactcttgttgttaatataatcccatttttgattgtt 36319145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 12218479 - 12218572
Alignment:
Q  154 ttgtctttaggttggttgaaagctagaaaag-tatcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 247  Q
    ||||| ||||||||||||||||||||||||| |||| ||||| ||||||||| |    ||||||||| ||||||| |  ||| ||||||||||||    
T  12218479 ttgtccttaggttggttgaaagctagaaaagctatc-tttatttttggtactcagcagtggtggtcatgcccttttctttgtctgggtattggct 12218572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 11155232 - 11155187
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttag 163  Q
    |||||| |||| |||||||| |||||||| ||||||||||||||||    
T  11155232 actcctatgcctaggttgctagataaagtgaaatatttgtctttag 11155187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 10623 - 10494
Alignment:
Q  118 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggt 217  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  |||||| ||||||| |||  |||||||||||    
T  10623 actcctttacccaggttgcttgacaaagtaaaatatttgtctttaggttggttgaaagctagaaacgcttcttttttgtttggcacttttagttggtggt 10524  T
Q  218 caagccctttacaatgtttgggtattggct 247  Q
     || ||| ||||||||||||||||||||||    
T  10523 taaacccgttacaatgtttgggtattggct 10494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 10449 - 10393
Alignment:
Q  310 gcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 366  Q
    ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  10449 gcacgtcttgtgctaatgagactcttgttgttaatataattccatttttgattgttc 10393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 181834 - 181722
Alignment:
Q  127 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaaaagtatcttttatgtttggtactaatagttggtggtcaagccctt 226  Q
    ||||||||| | |||||||| |||||| |||||||||  ||||||||||| | ||| ||    |||| ||||||| | ||||| ||||| ||||| || |    
T  181834 cccaggttgttagataaagttaaatatatgtctttagcctggttgaaagcaaaaaaggtggtctttaggtttggttcaaataggtggtgttcaagtccct 181735  T
Q  227 tacaatgtttggg 239  Q
    |||||||||||||    
T  181734 tacaatgtttggg 181722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University